Changes for page Molecular Tools: protein association rates and binding sites
Last modified by richtesn on 2022/05/23 22:36
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... ... @@ -2,9 +2,11 @@ 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= M y Collab'sExtendedTitle =5 += Molecular Tools: protein association rates and binding sites = 6 6 7 -My collab's subtitle 7 +This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates 8 + 9 +Authors: Stefan Richter 8 8 ))) 9 9 ))) 10 10 ... ... @@ -14,13 +14,31 @@ 14 14 ((( 15 15 = What can I find here? = 16 16 17 -* Notice how the table of contents on the right 18 -* is automatically updated 19 -* to hold this page's headers 19 +Please note, the corresponding usecases as jupyter notebooks will be transferred from Collaboratory 1. So far they can be found here: 20 +[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/362934>>https://collab.humanbrainproject.eu/#/collab/1655/nav/362934]] 20 20 22 +The corresponding guidebooks can be found here: 23 +[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/18580>>https://collab.humanbrainproject.eu/#/collab/1655/nav/18580]] 24 + 25 +The descriptions of 26 + 27 +* ((( 28 +Tools and tutorials that describes how to: 29 + 30 +* simulate protein-protein association using Brownian Dynamics (BD) simulations (web server webSDA) 31 +* analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants 32 +* compute protein electrostatic potential (under development) 33 +* ((( 34 +compare the electrostatic potentials surrounding a set of protein isoforms or specific regions with multipipsa (under development) 35 +))) 36 +* ((( 37 +identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development) 38 +))) 39 +))) 40 + 21 21 = Who has access? = 22 22 23 - Describetheaudience of thiscollab.43 +All EBRAINS users 24 24 ))) 25 25 26 26
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