Last modified by richtesn on 2022/05/23 22:36
From version 9.1
edited by dariak
on 2020/09/24 11:00
Change comment: There is no comment for this version
To version 20.2
edited by richtesn
on 2021/06/14 10:56
Change comment: There is no comment for this version

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1 -XWiki.dariak
1 +XWiki.richtesn
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Molecular Tools: protein association rates and binding sites =
5 += Molecular Tools:
6 +protein association rates and binding sites =
6 6  
7 -Authors: Stefan Richter
8 +This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates
9 +
10 +Authors: Neil Bruce, Daria Kokh, Stefan Richter, Rebecca Wade
8 8  )))
9 9  )))
10 10  
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14 14  (((
15 15  = What can I find here? =
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
20 +Please note, the corresponding usecases as jupyter notebooks will be transferred from Collaboratory 1. So far they can be found here: 
21 +[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/362934>>https://collab.humanbrainproject.eu/#/collab/1655/nav/362934]]
20 20  
23 +The corresponding guidebooks can be found here:
24 +[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/18580>>https://collab.humanbrainproject.eu/#/collab/1655/nav/18580]]
25 +
26 +The descriptions of
27 +
28 +* (((
29 +Tools and tutorials that describes how to:
30 +
31 +* simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
32 +* analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants
33 +* compute protein electrostatic potential (under development)
34 +* (((
35 +compare the electrostatic potentials surrounding a set of protein  isoforms or specific regions with multipipsa (under development)
36 +)))
37 +* (((
38 +identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development)
39 +)))
40 +)))
41 +
21 21  = Who has access? =
22 22  
23 23  All EBRAINS users
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