Last modified by ingrreit on 2023/09/27 16:42
From version 1.1
edited by ingrreit
on 2023/09/27 15:51
Change comment: There is no comment for this version
To version 2.1
edited by ingrreit
on 2023/09/27 15:53
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
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1 1  == ==
2 2  
3 -==== Or code ====
4 -
5 -Code blocks can be added by using the code macro:
6 -
7 -{{code language="python"}}
8 -x = 1
9 -if x == 1:
10 - # indented four spaces
11 - print("x is 1.")
12 -{{/code}}
13 -
14 -
15 15  (% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Neuroscientific datasets shared via EBRAINS go through a streamlined curation process, the openneurodata workflow,  that ensures relevant annotation of the data using (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__openMINDS__>>url:https://github.com/HumanBrainProject/openMINDS||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %), a metadata framework and their integration into (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__EBRAINS Knowledge Graph__>>url:https://docs.kg.ebrains.eu/||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %), a metadata management system. The datasets are Findable and Accessible through (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__Knowledge Graph Search__>>url:https://search.kg.ebrains.eu/?category=Dataset||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %) as a dataset card that displays information regarding dataset's Interoperability and Reusability.
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23 23  |(% style="width:365px" %)(((
24 24  (% style="line-height:1.38; text-align:justify" %)
25 25  (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-F1-01D - Data is assigned a globally unique identifier**
26 -)))|(% style="width:308px" %) (((
14 +)))|(% style="width:308px" %)(((
27 27  (% style="line-height:1.38; text-align:justify" %)
28 28  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card.
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32 32  )))
33 -|(% style="width:365px" %) (((
18 +|(% style="width:365px" %)(((
34 34  (% style="line-height:1.38; text-align:justify" %)
35 35  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol**
36 -
37 -\\
38 -)))|(% style="width:308px" %) (((
21 +)))|(% style="width:308px" %)(((
39 39  (% style="line-height:1.38; text-align:justify" %)
40 40  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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44 44  )))
45 -|(% style="width:365px" %) (((
25 +|(% style="width:365px" %)(((
46 46  (% style="line-height:1.38; text-align:justify" %)
47 47  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol **
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49 -
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51 -)))|(% style="width:308px" %) (((
28 +)))|(% style="width:308px" %)(((
52 52  (% style="line-height:1.38; text-align:justify" %)
53 53  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
54 -
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57 57  )))
58 -|(% style="width:365px" %) (((
32 +|(% style="width:365px" %)(((
59 59  (% style="line-height:1.38; text-align:justify" %)
60 60  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. **
61 -)))|(% style="width:308px" %) (((
35 +)))|(% style="width:308px" %)(((
62 62  (% style="line-height:1.38; text-align:justify" %)
63 63  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies).
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67 67  )))
68 -|(% style="width:365px" %)
69 -(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**ACCESSIBLE**|(% style="width:308px" %)
70 -|(% style="width:365px" %) (((
39 +|(% style="width:365px" %)(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**ACCESSIBLE**|(% style="width:308px" %)
40 +|(% style="width:365px" %)(((
71 71  (% style="line-height:1.38; text-align:justify" %)
72 72  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-01M - Metadata contains access level and access conditions of the data. **
73 -
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76 -)))|(% style="width:308px" %) (((
43 +)))|(% style="width:308px" %)(((
77 77  (% style="line-height:1.38; text-align:justify" %)
78 78  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card.
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82 82  )))
83 -|(% style="width:365px" %) (((
47 +|(% style="width:365px" %)(((
84 84  (% style="line-height:1.38; text-align:justify" %)
85 85  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol**
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89 -)))|(% style="width:308px" %) (((
50 +)))|(% style="width:308px" %)(((
90 90  (% style="line-height:1.38; text-align:justify" %)
91 91  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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95 95  )))
96 -|(% style="width:365px" %) (((
54 +|(% style="width:365px" %)(((
97 97  (% style="line-height:1.38; text-align:justify" %)
98 98  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol **
99 -
100 -
101 -
102 -)))|(% style="width:308px" %) (((
57 +)))|(% style="width:308px" %)(((
103 103  (% style="line-height:1.38; text-align:justify" %)
104 104  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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108 108  )))
109 -|(% style="width:365px" %) (((
61 +|(% style="width:365px" %)(((
110 110  (% style="line-height:1.38; text-align:justify" %)
111 111  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. **
112 -
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115 -)))|(% style="width:308px" %) (((
64 +)))|(% style="width:308px" %)(((
116 116  (% style="line-height:1.38; text-align:justify" %)
117 117  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies).
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121 121  )))
122 -|(% style="width:365px" %)
123 -(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**INTEROPERABLE**|(% style="width:308px" %)
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68 +|(% style="width:365px" %)(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**INTEROPERABLE**|(% style="width:308px" %)
69 +|(% style="width:365px" %)(((
125 125  (% style="line-height:1.38; text-align:justify" %)
126 126  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I1-01M - Metadata is represented using a formal knowledge representation language. **
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130 -)))|(% style="width:308px" %) (((
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131 131  (% style="line-height:1.38; text-align:justify" %)
132 132  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is an open and structured metadata language suited for neuroscience data structures. openMINDS metadata are defined in JSON and JSON-LD.
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137 -|(% style="width:365px" %) (((
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138 138  (% style="line-height:1.38; text-align:justify" %)
139 139  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I1-02M - Metadata uses semantic resources. **
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143 -)))|(% style="width:308px" %) (((
85 +)))|(% style="width:308px" %)(((
144 144  (% style="line-height:1.38; text-align:justify" %)
145 145  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is a metadata framework that integrates community-wide accepted neuroscience ontologies, in close collaboration with the (%%)[[(% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(17, 85, 204); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: underline; -webkit-text-decoration-skip: none; text-decoration-skip-ink: none" %)__Interlex project__>>url:https://neuinfo.org/interlex/dashboard||style="text-decoration:none"]](% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %).
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151 151  (% style="line-height:1.38; text-align:justify" %)
152 152  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I3-01M -Metadata includes links between the data and its related entities. **
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157 157  (% style="line-height:1.38; text-align:justify" %)
158 158  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS metadata schemas include references to internal (linked types) and external metadata (ontology identifier) through internationalized resource identifiers (IRI)
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164 -(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**REUSABLE**|(% style="width:308px" %)
99 +|(% style="width:365px" %)(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**REUSABLE**|(% style="width:308px" %)
165 165  |(% style="width:365px" %)(((
166 166  (% style="line-height:1.38; text-align:justify" %)
167 167  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1-01MD - Metadata specifies the content of the data. **
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172 172  |(% style="width:365px" %)(((
173 173  (% style="line-height:1.38; text-align:justify" %)
174 174  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.1-01M - Metadata includes license information under which data can be reused. **
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176 176  (% style="line-height:1.38; text-align:justify" %)
177 177  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(0, 0, 0); font-weight: 400; font-style: normal; text-decoration: none" %)All datasets have a Creative Commons license that is added as an openMINDS term.
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183 183  (% style="line-height:1.38; text-align:justify" %)
184 184  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.2-01M - Metadata includes provenance information about data creation or generation. **
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189 189  (% style="line-height:1.38; text-align:justify" %)
190 190  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)A minimum level of data provenance must be described in the Methods section of the EBRAINS Data descriptor. Data provenance can also be captured in machine-readable metadata as openMINDS protocols and protocol executions, or other modality-specific schemas.  
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197 197  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.3-01M - Metadata follows a standard recommended by the target research community of the data. **
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203 203  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is an open and  community-driven metadata standard uniting knowledge from a number of research initiatives.
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210 210  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.3-02D - Data is available in a file format recommended by the target research community. **
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216 216  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)EBRAINS recommends data providers share data in open file formats. But, proprietary file formats are also accepted when necessary.
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Public

Data Curation

Table of content