Wiki source code of FAIR assessment of EBRAINS datasets
Last modified by ingrreit on 2023/09/27 16:42
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| author | version | line-number | content |
|---|---|---|---|
| 1 | (% class="wikigeneratedid" id="H" %) | ||
| 2 | This assessment highlights the ways in which EBRAINS fulfills the 17 [[FAIRsFAIR Data Object Assessment Metrics>>https://zenodo.org/record/6461229]] for sharing datasets. | ||
| 3 | |||
| 4 | |||
| 5 | (% class="wikigeneratedid" %) | ||
| 6 | Please also see our [[video >>doc:Video]]higlighting how EBRAINS datasets are Findable, Accessible, Interoperable and Reusable in the EBRAINS Knowledge Graph. | ||
| 7 | |||
| 8 | |||
| 9 | |(% style="width:365px" %)(% style="color:#000000; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FINDABLE**|(% style="width:308px" %) | ||
| 10 | |(% style="width:365px" %)((( | ||
| 11 | (% style="line-height:1.38; text-align:justify" %) | ||
| 12 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-F1-01D - Data is assigned a globally unique identifier** | ||
| 13 | )))|(% style="width:308px" %)((( | ||
| 14 | (% style="line-height:1.38; text-align:justify" %) | ||
| 15 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card. | ||
| 16 | ))) | ||
| 17 | |(% style="width:365px" %)((( | ||
| 18 | (% style="line-height:1.38; text-align:justify" %) | ||
| 19 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol** | ||
| 20 | )))|(% style="width:308px" %)((( | ||
| 21 | (% style="line-height:1.38; text-align:justify" %) | ||
| 22 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
| 23 | ))) | ||
| 24 | |(% style="width:365px" %)((( | ||
| 25 | (% style="line-height:1.38; text-align:justify" %) | ||
| 26 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol ** | ||
| 27 | )))|(% style="width:308px" %)((( | ||
| 28 | (% style="line-height:1.38; text-align:justify" %) | ||
| 29 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
| 30 | ))) | ||
| 31 | |(% style="width:365px" %)((( | ||
| 32 | (% style="line-height:1.38; text-align:justify" %) | ||
| 33 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. ** | ||
| 34 | )))|(% style="width:308px" %)((( | ||
| 35 | (% style="line-height:1.38; text-align:justify" %) | ||
| 36 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies). | ||
| 37 | ))) | ||
| 38 | |(% style="width:365px" %)(% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**ACCESSIBLE**|(% style="width:308px" %) | ||
| 39 | |(% style="width:365px" %)((( | ||
| 40 | (% style="line-height:1.38; text-align:justify" %) | ||
| 41 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-01M - Metadata contains access level and access conditions of the data. ** | ||
| 42 | )))|(% style="width:308px" %)((( | ||
| 43 | (% style="line-height:1.38; text-align:justify" %) | ||
| 44 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card. | ||
| 45 | ))) | ||
| 46 | |(% style="width:365px" %)((( | ||
| 47 | (% style="line-height:1.38; text-align:justify" %) | ||
| 48 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol** | ||
| 49 | )))|(% style="width:308px" %)((( | ||
| 50 | (% style="line-height:1.38; text-align:justify" %) | ||
| 51 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
| 52 | ))) | ||
| 53 | |(% style="width:365px" %)((( | ||
| 54 | (% style="line-height:1.38; text-align:justify" %) | ||
| 55 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol ** | ||
| 56 | )))|(% style="width:308px" %)((( | ||
| 57 | (% style="line-height:1.38; text-align:justify" %) | ||
| 58 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
| 59 | ))) | ||
| 60 | |(% style="width:365px" %)((( | ||
| 61 | (% style="line-height:1.38; text-align:justify" %) | ||
| 62 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. ** | ||
| 63 | )))|(% style="width:308px" %)((( | ||
| 64 | (% style="line-height:1.38; text-align:justify" %) | ||
| 65 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies). | ||
| 66 | ))) | ||
| 67 | |(% style="width:365px" %)(% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**INTEROPERABLE**|(% style="width:308px" %) | ||
| 68 | |(% style="width:365px" %)((( | ||
| 69 | (% style="line-height:1.38; text-align:justify" %) | ||
| 70 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-I1-01M - Metadata is represented using a formal knowledge representation language. ** | ||
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| 74 | )))|(% style="width:308px" %)((( | ||
| 75 | (% style="line-height:1.38; text-align:justify" %) | ||
| 76 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS is an open and structured metadata language suited for neuroscience data structures. openMINDS metadata are defined in JSON and JSON-LD. | ||
| 77 | ))) | ||
| 78 | |(% style="width:365px" %)((( | ||
| 79 | (% style="line-height:1.38; text-align:justify" %) | ||
| 80 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-I1-02M - Metadata uses semantic resources. ** | ||
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| 83 | |||
| 84 | )))|(% style="width:308px" %)((( | ||
| 85 | (% style="line-height:1.38; text-align:justify" %) | ||
| 86 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS is a metadata framework that integrates community-wide accepted neuroscience ontologies, in close collaboration with the (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__Interlex project__>>url:https://neuinfo.org/interlex/dashboard||style="text-decoration:none"]](% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %). | ||
| 87 | ))) | ||
| 88 | |(% style="width:365px" %)((( | ||
| 89 | (% style="line-height:1.38; text-align:justify" %) | ||
| 90 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-I3-01M -Metadata includes links between the data and its related entities. ** | ||
| 91 | |||
| 92 | |||
| 93 | |||
| 94 | )))|(% style="width:308px" %)((( | ||
| 95 | (% style="line-height:1.38; text-align:justify" %) | ||
| 96 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS metadata schemas include references to internal (linked types) and external metadata (ontology identifier) through internationalized resource identifiers (IRI) | ||
| 97 | ))) | ||
| 98 | |(% style="width:365px" %)(% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**REUSABLE**|(% style="width:308px" %) | ||
| 99 | |(% style="width:365px" %)((( | ||
| 100 | (% style="line-height:1.38; text-align:justify" %) | ||
| 101 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1-01MD - Metadata specifies the content of the data. ** | ||
| 102 | )))|(% style="width:308px" %)((( | ||
| 103 | (% style="line-height:1.38; text-align:justify" %) | ||
| 104 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The content of the dataset is thoroughly described in the Data records section of the EBRAINS data descriptor, as well as via openMINDS terms. | ||
| 105 | ))) | ||
| 106 | |(% style="width:365px" %)((( | ||
| 107 | (% style="line-height:1.38; text-align:justify" %) | ||
| 108 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.1-01M - Metadata includes license information under which data can be reused. ** | ||
| 109 | )))|(% style="width:308px" %)((( | ||
| 110 | (% style="line-height:1.38; text-align:justify" %) | ||
| 111 | (% style="color:#000000; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)All datasets have a Creative Commons license that is added as an openMINDS term. | ||
| 112 | ))) | ||
| 113 | |(% style="width:365px" %)((( | ||
| 114 | (% style="line-height:1.38; text-align:justify" %) | ||
| 115 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.2-01M - Metadata includes provenance information about data creation or generation. ** | ||
| 116 | |||
| 117 | |||
| 118 | |||
| 119 | )))|(% style="width:308px" %)((( | ||
| 120 | (% style="line-height:1.38; text-align:justify" %) | ||
| 121 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)A minimum level of data provenance must be described in the Methods section of the EBRAINS Data descriptor. Data provenance can also be captured in machine-readable metadata as openMINDS protocols and protocol executions, or other modality-specific schemas. | ||
| 122 | ))) | ||
| 123 | |(% style="width:365px" %)((( | ||
| 124 | (% style="line-height:1.38; text-align:justify" %) | ||
| 125 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.3-01M - Metadata follows a standard recommended by the target research community of the data. ** | ||
| 126 | )))|(% style="width:308px" %)((( | ||
| 127 | (% style="line-height:1.38; text-align:justify" %) | ||
| 128 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS is an open and community-driven metadata standard uniting knowledge from a number of research initiatives. | ||
| 129 | ))) | ||
| 130 | |(% style="width:365px" %)((( | ||
| 131 | (% style="line-height:1.38; text-align:justify" %) | ||
| 132 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.3-02D - Data is available in a file format recommended by the target research community. ** | ||
| 133 | )))|(% style="width:308px" %)((( | ||
| 134 | (% style="line-height:1.38; text-align:justify" %) | ||
| 135 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)EBRAINS recommends data providers share data in open file formats. But, proprietary file formats are also accepted when necessary. | ||
| 136 | ))) | ||
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| 138 |