Last modified by ingrreit on 2023/09/27 16:42
From version 2.1
edited by ingrreit
on 2023/09/27 15:53
Change comment: There is no comment for this version
To version 1.1
edited by ingrreit
on 2023/09/27 15:51
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
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1 1  == ==
2 2  
3 +==== Or code ====
4 +
5 +Code blocks can be added by using the code macro:
6 +
7 +{{code language="python"}}
8 +x = 1
9 +if x == 1:
10 + # indented four spaces
11 + print("x is 1.")
12 +{{/code}}
13 +
14 +
3 3  (% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Neuroscientific datasets shared via EBRAINS go through a streamlined curation process, the openneurodata workflow,  that ensures relevant annotation of the data using (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__openMINDS__>>url:https://github.com/HumanBrainProject/openMINDS||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %), a metadata framework and their integration into (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__EBRAINS Knowledge Graph__>>url:https://docs.kg.ebrains.eu/||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %), a metadata management system. The datasets are Findable and Accessible through (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__Knowledge Graph Search__>>url:https://search.kg.ebrains.eu/?category=Dataset||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %) as a dataset card that displays information regarding dataset's Interoperability and Reusability.
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11 11  |(% style="width:365px" %)(((
12 12  (% style="line-height:1.38; text-align:justify" %)
13 13  (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-F1-01D - Data is assigned a globally unique identifier**
14 -)))|(% style="width:308px" %)(((
26 +)))|(% style="width:308px" %) (((
15 15  (% style="line-height:1.38; text-align:justify" %)
16 16  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card.
29 +
30 +
31 +
17 17  )))
18 -|(% style="width:365px" %)(((
33 +|(% style="width:365px" %) (((
19 19  (% style="line-height:1.38; text-align:justify" %)
20 20  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol**
21 -)))|(% style="width:308px" %)(((
36 +
37 +\\
38 +)))|(% style="width:308px" %) (((
22 22  (% style="line-height:1.38; text-align:justify" %)
23 23  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
41 +
42 +
43 +
24 24  )))
25 -|(% style="width:365px" %)(((
45 +|(% style="width:365px" %) (((
26 26  (% style="line-height:1.38; text-align:justify" %)
27 27  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol **
28 -)))|(% style="width:308px" %)(((
48 +
49 +
50 +
51 +)))|(% style="width:308px" %) (((
29 29  (% style="line-height:1.38; text-align:justify" %)
30 30  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
54 +
55 +
56 +
31 31  )))
32 -|(% style="width:365px" %)(((
58 +|(% style="width:365px" %) (((
33 33  (% style="line-height:1.38; text-align:justify" %)
34 34  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. **
35 -)))|(% style="width:308px" %)(((
61 +)))|(% style="width:308px" %) (((
36 36  (% style="line-height:1.38; text-align:justify" %)
37 37  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies).
64 +
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38 38  )))
39 -|(% style="width:365px" %)(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**ACCESSIBLE**|(% style="width:308px" %)
40 -|(% style="width:365px" %)(((
68 +|(% style="width:365px" %)
69 +(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**ACCESSIBLE**|(% style="width:308px" %)
70 +|(% style="width:365px" %) (((
41 41  (% style="line-height:1.38; text-align:justify" %)
42 42  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-01M - Metadata contains access level and access conditions of the data. **
43 -)))|(% style="width:308px" %)(((
73 +
74 +
75 +
76 +)))|(% style="width:308px" %) (((
44 44  (% style="line-height:1.38; text-align:justify" %)
45 45  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card.
79 +
80 +
81 +
46 46  )))
47 -|(% style="width:365px" %)(((
83 +|(% style="width:365px" %) (((
48 48  (% style="line-height:1.38; text-align:justify" %)
49 49  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol**
50 -)))|(% style="width:308px" %)(((
86 +
87 +
88 +
89 +)))|(% style="width:308px" %) (((
51 51  (% style="line-height:1.38; text-align:justify" %)
52 52  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
92 +
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53 53  )))
54 -|(% style="width:365px" %)(((
96 +|(% style="width:365px" %) (((
55 55  (% style="line-height:1.38; text-align:justify" %)
56 56  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol **
57 -)))|(% style="width:308px" %)(((
99 +
100 +
101 +
102 +)))|(% style="width:308px" %) (((
58 58  (% style="line-height:1.38; text-align:justify" %)
59 59  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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60 60  )))
61 -|(% style="width:365px" %)(((
109 +|(% style="width:365px" %) (((
62 62  (% style="line-height:1.38; text-align:justify" %)
63 63  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. **
64 -)))|(% style="width:308px" %)(((
112 +
113 +
114 +
115 +)))|(% style="width:308px" %) (((
65 65  (% style="line-height:1.38; text-align:justify" %)
66 66  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies).
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67 67  )))
68 -|(% style="width:365px" %)(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**INTEROPERABLE**|(% style="width:308px" %)
69 -|(% style="width:365px" %)(((
122 +|(% style="width:365px" %)
123 +(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**INTEROPERABLE**|(% style="width:308px" %)
124 +|(% style="width:365px" %) (((
70 70  (% style="line-height:1.38; text-align:justify" %)
71 71  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I1-01M - Metadata is represented using a formal knowledge representation language. **
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75 -)))|(% style="width:308px" %)(((
130 +)))|(% style="width:308px" %) (((
76 76  (% style="line-height:1.38; text-align:justify" %)
77 77  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is an open and structured metadata language suited for neuroscience data structures. openMINDS metadata are defined in JSON and JSON-LD.
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78 78  )))
79 -|(% style="width:365px" %)(((
137 +|(% style="width:365px" %) (((
80 80  (% style="line-height:1.38; text-align:justify" %)
81 81  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I1-02M - Metadata uses semantic resources. **
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85 -)))|(% style="width:308px" %)(((
143 +)))|(% style="width:308px" %) (((
86 86  (% style="line-height:1.38; text-align:justify" %)
87 87  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is a metadata framework that integrates community-wide accepted neuroscience ontologies, in close collaboration with the (%%)[[(% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(17, 85, 204); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: underline; -webkit-text-decoration-skip: none; text-decoration-skip-ink: none" %)__Interlex project__>>url:https://neuinfo.org/interlex/dashboard||style="text-decoration:none"]](% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %).
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88 88  )))
89 -|(% style="width:365px" %)(((
150 +|(% style="width:365px" %) (((
90 90  (% style="line-height:1.38; text-align:justify" %)
91 91  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I3-01M -Metadata includes links between the data and its related entities. **
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95 -)))|(% style="width:308px" %)(((
156 +)))|(% style="width:308px" %) (((
96 96  (% style="line-height:1.38; text-align:justify" %)
97 97  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS metadata schemas include references to internal (linked types) and external metadata (ontology identifier) through internationalized resource identifiers (IRI)
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99 -|(% style="width:365px" %)(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**REUSABLE**|(% style="width:308px" %)
163 +|(% style="width:365px" %)
164 +(% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**REUSABLE**|(% style="width:308px" %)
100 100  |(% style="width:365px" %)(((
101 101  (% style="line-height:1.38; text-align:justify" %)
102 102  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1-01MD - Metadata specifies the content of the data. **
... ... @@ -107,33 +107,51 @@
107 107  |(% style="width:365px" %)(((
108 108  (% style="line-height:1.38; text-align:justify" %)
109 109  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.1-01M - Metadata includes license information under which data can be reused. **
110 -)))|(% style="width:308px" %)(((
175 +)))|(% style="width:308px" %) (((
111 111  (% style="line-height:1.38; text-align:justify" %)
112 112  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(0, 0, 0); font-weight: 400; font-style: normal; text-decoration: none" %)All datasets have a Creative Commons license that is added as an openMINDS term.
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115 115  (% style="line-height:1.38; text-align:justify" %)
116 116  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.2-01M - Metadata includes provenance information about data creation or generation. **
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120 -)))|(% style="width:308px" %)(((
188 +)))|(% style="width:308px" %) (((
121 121  (% style="line-height:1.38; text-align:justify" %)
122 122  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)A minimum level of data provenance must be described in the Methods section of the EBRAINS Data descriptor. Data provenance can also be captured in machine-readable metadata as openMINDS protocols and protocol executions, or other modality-specific schemas.  
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124 -|(% style="width:365px" %)(((
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125 125  (% style="line-height:1.38; text-align:justify" %)
126 126  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.3-01M - Metadata follows a standard recommended by the target research community of the data. **
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128 128  (% style="line-height:1.38; text-align:justify" %)
129 129  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is an open and  community-driven metadata standard uniting knowledge from a number of research initiatives.
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131 -|(% style="width:365px" %)(((
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132 132  (% style="line-height:1.38; text-align:justify" %)
133 133  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.3-02D - Data is available in a file format recommended by the target research community. **
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135 135  (% style="line-height:1.38; text-align:justify" %)
136 136  (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)EBRAINS recommends data providers share data in open file formats. But, proprietary file formats are also accepted when necessary.
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137 137  )))
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Public

Data Curation

Table of content