Wiki source code of FAIR assessment of EBRAINS datasets
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1 | (% class="wikigeneratedid" id="H" %) | ||
2 | (% style="background-color:#ffffff; color:#333333; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)This assessment highlights the ways in which EBRAINS fulfills the 17 core data FAIRness metrics proposed by (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__FAIRsFAIR__>>url:https://zenodo.org/record/6461229||style="text-decoration:none"]](% style="background-color:#ffffff; color:#333333; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %) for sharing datasets. | ||
3 | |||
4 | |||
5 | |(% style="width:365px" %)(% style="color:#000000; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FINDABLE**|(% style="width:308px" %) | ||
6 | |(% style="width:365px" %)((( | ||
7 | (% style="line-height:1.38; text-align:justify" %) | ||
8 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-F1-01D - Data is assigned a globally unique identifier** | ||
9 | )))|(% style="width:308px" %)((( | ||
10 | (% style="line-height:1.38; text-align:justify" %) | ||
11 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card. | ||
12 | ))) | ||
13 | |(% style="width:365px" %)((( | ||
14 | (% style="line-height:1.38; text-align:justify" %) | ||
15 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol** | ||
16 | )))|(% style="width:308px" %)((( | ||
17 | (% style="line-height:1.38; text-align:justify" %) | ||
18 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
19 | ))) | ||
20 | |(% style="width:365px" %)((( | ||
21 | (% style="line-height:1.38; text-align:justify" %) | ||
22 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol ** | ||
23 | )))|(% style="width:308px" %)((( | ||
24 | (% style="line-height:1.38; text-align:justify" %) | ||
25 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
26 | ))) | ||
27 | |(% style="width:365px" %)((( | ||
28 | (% style="line-height:1.38; text-align:justify" %) | ||
29 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. ** | ||
30 | )))|(% style="width:308px" %)((( | ||
31 | (% style="line-height:1.38; text-align:justify" %) | ||
32 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies). | ||
33 | ))) | ||
34 | |(% style="width:365px" %)(% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**ACCESSIBLE**|(% style="width:308px" %) | ||
35 | |(% style="width:365px" %)((( | ||
36 | (% style="line-height:1.38; text-align:justify" %) | ||
37 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-01M - Metadata contains access level and access conditions of the data. ** | ||
38 | )))|(% style="width:308px" %)((( | ||
39 | (% style="line-height:1.38; text-align:justify" %) | ||
40 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card. | ||
41 | ))) | ||
42 | |(% style="width:365px" %)((( | ||
43 | (% style="line-height:1.38; text-align:justify" %) | ||
44 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol** | ||
45 | )))|(% style="width:308px" %)((( | ||
46 | (% style="line-height:1.38; text-align:justify" %) | ||
47 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
48 | ))) | ||
49 | |(% style="width:365px" %)((( | ||
50 | (% style="line-height:1.38; text-align:justify" %) | ||
51 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol ** | ||
52 | )))|(% style="width:308px" %)((( | ||
53 | (% style="line-height:1.38; text-align:justify" %) | ||
54 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration. | ||
55 | ))) | ||
56 | |(% style="width:365px" %)((( | ||
57 | (% style="line-height:1.38; text-align:justify" %) | ||
58 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. ** | ||
59 | )))|(% style="width:308px" %)((( | ||
60 | (% style="line-height:1.38; text-align:justify" %) | ||
61 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies). | ||
62 | ))) | ||
63 | |(% style="width:365px" %)(% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**INTEROPERABLE**|(% style="width:308px" %) | ||
64 | |(% style="width:365px" %)((( | ||
65 | (% style="line-height:1.38; text-align:justify" %) | ||
66 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-I1-01M - Metadata is represented using a formal knowledge representation language. ** | ||
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70 | )))|(% style="width:308px" %)((( | ||
71 | (% style="line-height:1.38; text-align:justify" %) | ||
72 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS is an open and structured metadata language suited for neuroscience data structures. openMINDS metadata are defined in JSON and JSON-LD. | ||
73 | ))) | ||
74 | |(% style="width:365px" %)((( | ||
75 | (% style="line-height:1.38; text-align:justify" %) | ||
76 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-I1-02M - Metadata uses semantic resources. ** | ||
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80 | )))|(% style="width:308px" %)((( | ||
81 | (% style="line-height:1.38; text-align:justify" %) | ||
82 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS is a metadata framework that integrates community-wide accepted neuroscience ontologies, in close collaboration with the (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__Interlex project__>>url:https://neuinfo.org/interlex/dashboard||style="text-decoration:none"]](% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %). | ||
83 | ))) | ||
84 | |(% style="width:365px" %)((( | ||
85 | (% style="line-height:1.38; text-align:justify" %) | ||
86 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-I3-01M -Metadata includes links between the data and its related entities. ** | ||
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90 | )))|(% style="width:308px" %)((( | ||
91 | (% style="line-height:1.38; text-align:justify" %) | ||
92 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS metadata schemas include references to internal (linked types) and external metadata (ontology identifier) through internationalized resource identifiers (IRI) | ||
93 | ))) | ||
94 | |(% style="width:365px" %)(% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**REUSABLE**|(% style="width:308px" %) | ||
95 | |(% style="width:365px" %)((( | ||
96 | (% style="line-height:1.38; text-align:justify" %) | ||
97 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1-01MD - Metadata specifies the content of the data. ** | ||
98 | )))|(% style="width:308px" %)((( | ||
99 | (% style="line-height:1.38; text-align:justify" %) | ||
100 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)The content of the dataset is thoroughly described in the Data records section of the EBRAINS data descriptor, as well as via openMINDS terms. | ||
101 | ))) | ||
102 | |(% style="width:365px" %)((( | ||
103 | (% style="line-height:1.38; text-align:justify" %) | ||
104 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.1-01M - Metadata includes license information under which data can be reused. ** | ||
105 | )))|(% style="width:308px" %)((( | ||
106 | (% style="line-height:1.38; text-align:justify" %) | ||
107 | (% style="color:#000000; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)All datasets have a Creative Commons license that is added as an openMINDS term. | ||
108 | ))) | ||
109 | |(% style="width:365px" %)((( | ||
110 | (% style="line-height:1.38; text-align:justify" %) | ||
111 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.2-01M - Metadata includes provenance information about data creation or generation. ** | ||
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115 | )))|(% style="width:308px" %)((( | ||
116 | (% style="line-height:1.38; text-align:justify" %) | ||
117 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)A minimum level of data provenance must be described in the Methods section of the EBRAINS Data descriptor. Data provenance can also be captured in machine-readable metadata as openMINDS protocols and protocol executions, or other modality-specific schemas. | ||
118 | ))) | ||
119 | |(% style="width:365px" %)((( | ||
120 | (% style="line-height:1.38; text-align:justify" %) | ||
121 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.3-01M - Metadata follows a standard recommended by the target research community of the data. ** | ||
122 | )))|(% style="width:308px" %)((( | ||
123 | (% style="line-height:1.38; text-align:justify" %) | ||
124 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)openMINDS is an open and community-driven metadata standard uniting knowledge from a number of research initiatives. | ||
125 | ))) | ||
126 | |(% style="width:365px" %)((( | ||
127 | (% style="line-height:1.38; text-align:justify" %) | ||
128 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-R1.3-02D - Data is available in a file format recommended by the target research community. ** | ||
129 | )))|(% style="width:308px" %)((( | ||
130 | (% style="line-height:1.38; text-align:justify" %) | ||
131 | (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)EBRAINS recommends data providers share data in open file formats. But, proprietary file formats are also accepted when necessary. | ||
132 | ))) | ||
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