Tools and services tutorials

Last modified by abonard on 2025/04/10 15:19

Welcome to the single entry point to tutorials for EBRAINS tools and services.
Here, you can find a list of EBRAINS offerings, sorted by topic, and links to their tutorials.

Some of the tutorials can also be accessed via the EBRAINS YouTube channel.

Atlases

ilastik
Julich-Brain Cytoarchitectonic Atlas
LocaliZoom
MeshView
Nutil
QuickNII
siibra-explorer
siibra-python
VisuAlign
voluba - Volumetric Brain Anchoring
WebAlign
WebWarp

Medical Analytics

Bids Manager & Pipeline
Brainstorm

Modelling and Simulation

Arbor
Arbor GUI
BluePyMM
BluePyOpt
BrainScaleS Operating System
Electrophysiology Analysis Toolkit
Hodgkin Huxley Neuron Builder
Local Field Potentials in Python
NEST Desktop
NEST Simulator
NESTML
Neuron
Neurorobotics Platform
PyNN
SpiNNaker Jupyter service
sPyNNaker
The Virtual Brain
ViSimpl

FAIR data

(Dataset) Excitability of mouse hippocampal CA1 pyramidal neurons during sustained (500 ms) strong depolarization
(Dataset) Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates
EBRAINS Knowledge Graph
EBRAINS Live Papers Builder
Electrophysiology Analysis Toolkit

Computing Infrastructure

SpiNNaker Jupyter service

Miscellaneous

EBRAINS Live Papers Viewer

Miscellaneous tutorials

IPR, exploitation and translation of research - Lecture 7: Looking into the future using emerging trends: What are they and how do we identify them? Part 1
Level: beginner  Type: video presentation

Innovation management: Innovation management tools in the HBP and EBRAINS context - Part 2
Level: beginner  Type: video presentation

Technology Readiness Level Assessment Course
Level: beginner  Type: video presentation

IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 2
Level: beginner  Type: video presentation

IRP, exploitaiton and translation of research course - Lecture 3: Basic elements in the patenting world Part 1
Level: -  Type: video presentation

IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 1
Level: beginner  Type: video presentation

Intellectual Property Rights (IRP), translation & exploitation of research- Introduction to the courses
Level: beginner  Type: video presentation

IRP, exploitaiton and translation of research course - Lecture 1:  Is your "Million Dollar Idea" a viable business concept?
Level: beginner  Type: video presentation

IRP, exploitaiton and translation of research course - Lecture 2: Bottom-up research: The most critical skill in entrepreneurship
Level: beginner  Type: video presentation

Innovation Funding Workshop
Level: beginner  Type: video tutorial

IPR, exploitation and translation of research course - Lecture 6: Transferring innovation from academy to industry Part 2
Level: beginner  Type: video presentation

IPR, exploitation and translation of research course - Lecture 4: Patents in the realm of neuroscience Part 2
Level: beginner  Type: -

IRP, exploitaiton and translation of research course - Lecture 3: Basic elements in the patenting world Part 2
Level: beginner  Type: video presentation

Plans for the exploitation of HBP technologies course
Level: beginner  Type: video tutorial

Key factors to successful exploitation of research results and technology transfer
Level: beginner  Type: slide deck

IPR, exploitation and translation of research - Lecture 7: Looking into the future using emerging trends: What are they and how do we identify them? Part 2
Level: beginner  Type: video presentation

IPR, exploitation and translation of research course - Lecture 4: Patents in the realm of neuroscience Part 1
Level: beginner  Type: video presentation

IPR, exploitation and translation of research course - Lecture 6: Transferring innovation from academy to industry Part 1
Level: beginner  Type: video presentation

Innovation management: Innovation management tools in the HBP and EBRAINS context - Part 1
Level: beginner  Type: video presentation