Wiki source code of Tools and services tutorials

Last modified by abonard on 2025/05/23 13:23
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1
2 (% class="box infomessage" id="welcome" style="text-align: center;" %)
3 (((
4 Welcome to the single entry point to tutorials for EBRAINS tools and services.
5 Here, you can find a list of EBRAINS offerings, sorted by topic, and links to their tutorials.
6 )))
7
8 Some of the tutorials can also be accessed via the [[EBRAINS YouTube channel>>https://www.youtube.com/channel/UC6E796cVVR5Xrs2A5jJmleQ]].
9
10 === **Atlases** ===
11
12 **[[ilastik>>doc:.ilastik.WebHome]]**
13 **[[Julich-Brain Cytoarchitectonic Atlas>>doc:.Julich-Brain Cytoarchitectonic Atlas.WebHome]]**
14 **[[LocaliZoom>>doc:.LocaliZoom.WebHome]]**
15 **[[MeshView>>doc:.MeshView.WebHome]]**
16 **[[Nutil>>doc:.Nutil.WebHome]]**
17 **[[QuickNII>>doc:.QuickNII.WebHome]]**
18 **[[siibra-explorer>>doc:.siibra-explorer.WebHome]]**
19 **[[siibra-python>>doc:.siibra-python.WebHome]]**
20 **[[VisuAlign>>doc:.VisuAlign.WebHome]]**
21 **[[voluba - Volumetric Brain Anchoring>>doc:.voluba - Volumetric Brain Anchoring.WebHome]]**
22 **[[WebAlign>>doc:.WebAlign.WebHome]]**
23 **[[WebWarp>>doc:.WebWarp.WebHome]]**
24
25 === **Medical Analytics** ===
26
27 **[[Bids Manager & Pipeline>>doc:.Bids Manager & Pipeline.WebHome]]**
28 **[[Brainstorm>>doc:.Brainstorm.WebHome]]**
29
30 === **Modelling and Simulation** ===
31
32 **[[Arbor>>doc:.Arbor.WebHome]]**
33 **[[Arbor GUI>>doc:.Arbor GUI.WebHome]]**
34 **[[BluePyMM>>doc:.BluePyMM.WebHome]]**
35 **[[BluePyOpt>>doc:.BluePyOpt.WebHome]]**
36 **[[BrainScaleS Operating System>>doc:.BrainScaleS Operating System.WebHome]]**
37 **[[Electrophysiology Analysis Toolkit>>doc:.Electrophysiology Analysis Toolkit.WebHome]]**
38 **[[Hodgkin Huxley Neuron Builder>>doc:.Hodgkin Huxley Neuron Builder.WebHome]]**
39 **[[Local Field Potentials in Python>>doc:.Local Field Potentials in Python.WebHome]]**
40 **[[NEST Desktop>>doc:.NEST Desktop.WebHome]]**
41 **[[NEST Simulator>>doc:.NEST Simulator.WebHome]]**
42 **[[NESTML>>doc:.NESTML.WebHome]]**
43 **[[Neuron>>doc:.Neuron.WebHome]]**
44 **[[Neurorobotics Platform>>doc:.Neurorobotics Platform.WebHome]]**
45 **[[PyNN>>doc:.PyNN.WebHome]]**
46 **[[SpiNNaker Jupyter service>>doc:.SpiNNaker Jupyter service.WebHome]]**
47 **[[sPyNNaker>>doc:.sPyNNaker.WebHome]]**
48 **[[The Virtual Brain>>doc:.The Virtual Brain.WebHome]]**
49 **[[ViSimpl>>doc:.ViSimpl.WebHome]]**
50
51 === **FAIR data** ===
52
53 **[[(Dataset) Excitability of mouse hippocampal CA1 pyramidal neurons during sustained (500 ms) strong depolarization>>doc:.(Dataset) Excitability of mouse hippocampal CA1 pyramidal neurons during sustained (500 ms) strong depolarization.WebHome]]**
54 **[[(Dataset) Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates>>doc:.(Dataset) Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates.WebHome]]**
55 **[[EBRAINS Knowledge Graph>>doc:.EBRAINS Knowledge Graph.WebHome]]**
56 **[[EBRAINS Live Papers Builder>>doc:.EBRAINS Live Papers Builder.WebHome]]**
57 **[[Electrophysiology Analysis Toolkit>>doc:.Electrophysiology Analysis Toolkit.WebHome]]**
58
59 === **Computing Infrastructure** ===
60
61 **[[SpiNNaker Jupyter service>>doc:.SpiNNaker Jupyter service.WebHome]]**
62
63 === **Miscellaneous** ===
64
65 **[[EBRAINS Live Papers Viewer>>doc:.EBRAINS Live Papers Viewer.WebHome]]**
66
67
68 **Miscellaneous tutorials**
69
70 **[[IPR, exploitation and translation of research - Lecture 7: Looking into the future using emerging trends: What are they and how do we identify them? Part 1>>https://www.youtube.com/watch?v=8j6klXkSv0s&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=13||rel=" noopener noreferrer" target="_blank"]]**
71 **Level**: beginner(%%) **Type**: video presentation
72
73 **[[Innovation management: Innovation management tools in the HBP and EBRAINS context - Part 2>>https://www.youtube.com/watch?v=9IUMUkrH_Vs&list=PLvAS8zldX4CjlNfu4tEIPc6uKWGzglHei||rel=" noopener noreferrer" target="_blank"]]**
74 **Level**: beginner(%%) **Type**: video presentation
75
76 **[[Technology Readiness Level Assessment Course>>https://www.humanbrainproject.eu/en/collaborate-hbp/innovation-industry/trl-assessment-course/||rel=" noopener noreferrer" target="_blank"]]**
77 **Level**: beginner(%%) **Type**: video presentation
78
79 **[[IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 2>>https://www.youtube.com/watch?v=iwTiZpRe9LE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=9||rel=" noopener noreferrer" target="_blank"]]**
80 **Level**: beginner(%%) **Type**: video presentation
81
82 **[[IRP, exploitaiton and translation of research course - Lecture 3: Basic elements in the patenting world Part 1>>https://www.youtube.com/watch?v=Ii-bJlLOhyE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=5||rel=" noopener noreferrer" target="_blank"]]**
83 **Level**: -(%%) **Type**: video presentation
84
85 **[[IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 1>>https://www.youtube.com/watch?v=iwTiZpRe9LE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=9||rel=" noopener noreferrer" target="_blank"]]**
86 **Level**: beginner(%%) **Type**: video presentation
87
88 **[[Intellectual Property Rights (IRP), translation & exploitation of research- Introduction to the courses>>https://www.youtube.com/watch?v=K6gvvRv289c&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu||rel=" noopener noreferrer" target="_blank"]]**
89 **Level**: beginner(%%) **Type**: video presentation
90
91 **[[IRP, exploitaiton and translation of research course - Lecture 1: Is your "Million Dollar Idea" a viable business concept?>>https://www.youtube.com/watch?v=W9kXSuQo9M0&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=3||rel=" noopener noreferrer" target="_blank"]]**
92 **Level**: beginner(%%) **Type**: video presentation
93
94 **[[IRP, exploitaiton and translation of research course - Lecture 2: Bottom-up research: The most critical skill in entrepreneurship>>https://www.youtube.com/watch?v=XZBMnUjelEQ&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=4||rel=" noopener noreferrer" target="_blank"]]**
95 **Level**: beginner(%%) **Type**: video presentation
96
97 **[[Innovation Funding Workshop>>https://youtu.be/JFxaoK2yMqI||rel=" noopener noreferrer" target="_blank"]]**
98 **Level**: beginner(%%) **Type**: video tutorial
99
100 **[[IPR, exploitation and translation of research course - Lecture 6: Transferring innovation from academy to industry Part 2>>https://www.youtube.com/watch?v=Js9-COrdFS0&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=12||rel=" noopener noreferrer" target="_blank"]]**
101 **Level**: beginner(%%) **Type**: video presentation
102
103 **[[IPR, exploitation and translation of research course - Lecture 4: Patents in the realm of neuroscience Part 2>>https://www.youtube.com/watch?v=ba9pQ3LqoHw&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu||rel=" noopener noreferrer" target="_blank"]]**
104 **Level**: beginner(%%) **Type**: -
105
106 **[[IRP, exploitaiton and translation of research course - Lecture 3: Basic elements in the patenting world Part 2>>https://www.youtube.com/watch?v=4TFb77VsmFQ&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=6||rel=" noopener noreferrer" target="_blank"]]**
107 **Level**: beginner(%%) **Type**: video presentation
108
109 **[[Plans for the exploitation of HBP technologies course>>https://www.humanbrainproject.eu/en/collaborate-hbp/innovation-industry/exploitation-plan-course/||rel=" noopener noreferrer" target="_blank"]]**
110 **Level**: beginner(%%) **Type**: video tutorial
111
112 **[[Key factors to successful exploitation of research results and technology transfer>>https://sos-ch-dk-2.exo.io/public-website-production/filer_public/47/7e/477eb33a-27ce-42f5-b4d3-620339864294/key_factors_innovation_and_tech_transfer.pdf||rel=" noopener noreferrer" target="_blank"]]**
113 **Level**: beginner(%%) **Type**: slide deck
114
115 **[[IPR, exploitation and translation of research - Lecture 7: Looking into the future using emerging trends: What are they and how do we identify them? Part 2>>https://www.youtube.com/watch?v=b0vOyHTW2Rc&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=14||rel=" noopener noreferrer" target="_blank"]]**
116 **Level**: beginner(%%) **Type**: video presentation
117
118 **[[IPR, exploitation and translation of research course - Lecture 4: Patents in the realm of neuroscience Part 1>>https://www.youtube.com/watch?v=8m-ucwJhtV4&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu||rel=" noopener noreferrer" target="_blank"]]**
119 **Level**: beginner(%%) **Type**: video presentation
120
121 **[[IPR, exploitation and translation of research course - Lecture 6: Transferring innovation from academy to industry Part 1>>https://www.youtube.com/watch?v=8FQzTR5aWA0&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=11||rel=" noopener noreferrer" target="_blank"]]**
122 **Level**: beginner(%%) **Type**: video presentation
123
124 **[[Innovation management: Innovation management tools in the HBP and EBRAINS context - Part 1>>https://www.youtube.com/watch?v=NNbwITmioEI&list=PLvAS8zldX4CjlNfu4tEIPc6uKWGzglHei||rel=" noopener noreferrer" target="_blank"]]**
125 **Level**: beginner(%%) **Type**: video presentation
126
127 **[[Example Slide deck – Key factors to successful exploitation of research results and technology transfer>>https://sos-ch-dk-2.exo.io/public-website-production/filer_public/47/7e/477eb33a-27ce-42f5-b4d3-620339864294/key_factors_innovation_and_tech_transfer.pdf||rel=" noopener noreferrer" target="_blank"]]**
128 **Level**: beginner(%%) **Type**: slide deck
129
130 **[[IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 1 (Copy)>>https://www.youtube.com/watch?v=iwTiZpRe9LE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=9||rel=" noopener noreferrer" target="_blank"]]**
131 **Level**: beginner(%%) **Type**: video presentation