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2		-=== Welcome to the single entry point to tutorials for EBRAINS tools and services. Here, you can find a list of EBRAINS offerings, sorted by topic, and links to their tutorials. ===
	1	+(% class="box infomessage" id="HWelcometothesingleentrypointtotutorialsforEBRAINStoolsandservices.Here2CyoucanfindalistofEBRAINSofferings2Csortedbytopic2Candlinkstotheirtutorials." style="text-align: center;" %)
	2	+(((
	3	+Welcome to the single entry point to tutorials for EBRAINS tools and services. Here, you can find a list of EBRAINS offerings, sorted by topic, and links to their tutorials.
	4	+)))
3	3
	6	+Some of the tutorials can also be accessed via the [[EBRAINS YouTube channel>>https://www.youtube.com/channel/UC6E796cVVR5Xrs2A5jJmleQ]].
4	4
5		-This page is work in progress. It is incomplete for now. But it will include all of EBRAINS tutorials very soon.
6		-
7		-Some tutorials are also available on [[EBRAINS YouTube channel>>https://www.youtube.com/channel/UC6E796cVVR5Xrs2A5jJmleQ]].
8		-
9	9	== Arbor ==
10	10
11	11	* [[A simple single cell model>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_model.html||rel="noopener noreferrer" target="_blank"]] (beginner)
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22	22	* [[Spike Timing-dependent Plasticity Curve>>https://docs.arbor-sim.org/en/stable/tutorial/calcium_stdp_curve.html||rel="noopener noreferrer" target="_blank"]] (advanced)
23	23	* [[Two cells connected via a gap junction>>https://docs.arbor-sim.org/en/stable/tutorial/network_two_cells_gap_junctions.html||rel="noopener noreferrer" target="_blank"]] (advanced)
24	24
	24	+== Bids Manager & Pipeline ==
	25	+
	26	+* [[BIDS Manager>>https://github.com/Dynamap/BIDS_Manager/blob/master/Tutorial_BIDS_Manager.pdf||rel="noopener noreferrer" target="_blank"]] (advanced)
	27	+
	28	+== BluePyMM ==
	29	+
	30	+* [[BluePyMM>>https://github.com/BlueBrain/BluePyMM/blob/master/notebook/BluePyMM.ipynb||rel="noopener noreferrer" target="_blank"]] (beginner)
	31	+
	32	+== BluePyOpt ==
	33	+
	34	+* [[Creating a simple cell optimisation>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/simplecell/simplecell.ipynb||rel="noopener noreferrer" target="_blank"]] (beginner)
	35	+
	36	+== Brainstorm ==
	37	+
	38	+* [[Introduction tutorials>>https://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction||rel="noopener noreferrer" target="_blank"]] (beginner)
	39	+* [[Best: Brain Entropy in space and time>>https://neuroimage.usc.edu/brainstorm/Tutorials/TutBEst||rel="noopener noreferrer" target="_blank"]] (advanced)
	40	+* [[Connectivity>>https://neuroimage.usc.edu/brainstorm/Tutorials/Connectivity||rel="noopener noreferrer" target="_blank"]] (advanced)
	41	+* [[Connectivity Graphs>>https://neuroimage.usc.edu/brainstorm/Tutorials/ConnectivityGraph||rel="noopener noreferrer" target="_blank"]] (advanced)
	42	+* [[Converting to Brainstorm Events>>https://neuroimage.usc.edu/brainstorm/e-phys/ConvertToBrainstormEvents||rel="noopener noreferrer" target="_blank"]] (advanced)
	43	+* [[Coordinate systems>>https://neuroimage.usc.edu/brainstorm/CoordinateSystems||rel="noopener noreferrer" target="_blank"]] (advanced)
	44	+* [[Corticomuscular coherence (CTF MEG)>>https://neuroimage.usc.edu/brainstorm/Tutorials/CorticomuscularCoherence||rel="noopener noreferrer" target="_blank"]] (advanced)
	45	+* [[Deriving LFP signals from raw signals>>https://neuroimage.usc.edu/brainstorm/e-phys/RawToLFP||rel="noopener noreferrer" target="_blank"]] (advanced)
	46	+* [[Digitize EEG sensor locations and head shape>>https://neuroimage.usc.edu/brainstorm/Tutorials/TutDigitize||rel="noopener noreferrer" target="_blank"]] (advanced)
	47	+* [[ECoG/sEEG tutorial>>https://neuroimage.usc.edu/brainstorm/Tutorials/ECoG||rel="noopener noreferrer" target="_blank"]] (advanced)
	48	+* [[EEG and epilepsy>>https://neuroimage.usc.edu/brainstorm/Tutorials/Epilepsy||rel="noopener noreferrer" target="_blank"]] (advanced)
	49	+* [[Elekta-Neuromag tutorial: Median nerve stimulation>>https://neuroimage.usc.edu/brainstorm/Tutorials/TutMindNeuromag||rel="noopener noreferrer" target="_blank"]] (advanced)
	50	+* [[Epileptogenic Zone Fingerprint>>https://neuroimage.usc.edu/brainstorm/Tutorials/EZFingerprint||rel="noopener noreferrer" target="_blank"]] (advanced)
	51	+* [[Export raw files in BIDS format>>https://neuroimage.usc.edu/brainstorm/ExportBids||rel="noopener noreferrer" target="_blank"]] (advanced)
	52	+* [[Export surface source maps to SPM12>>https://neuroimage.usc.edu/brainstorm/ExportSpm12||rel="noopener noreferrer" target="_blank"]] (advanced)
	53	+* [[Export volume source maps to SPM8 / SPM12>>https://neuroimage.usc.edu/brainstorm/ExportSpm8||rel="noopener noreferrer" target="_blank"]] (advanced)
	54	+* [[FEM advanced tutorial with MEG/EEG Median nerve stimulation>>https://neuroimage.usc.edu/brainstorm/Tutorials/FemMedianNerve||rel="noopener noreferrer" target="_blank"]] (advanced)
	55	+* [[FEM mesh generation>>https://neuroimage.usc.edu/brainstorm/Tutorials/FemMesh||rel="noopener noreferrer" target="_blank"]] (advanced)
	56	+* [[FEM tensors estimation with BrainSuite>>https://neuroimage.usc.edu/brainstorm/Tutorials/FemTensors||rel="noopener noreferrer" target="_blank"]] (advanced)
	57	+* [[Fitting dipoles with FieldTrip>>https://neuroimage.usc.edu/brainstorm/Tutorials/DipoleFitting||rel="noopener noreferrer" target="_blank"]] (advanced)
	58	+* [[Fitting Oscillations and One-Over-F (FOOOF)>>https://neuroimage.usc.edu/brainstorm/Tutorials/Fooof||rel="noopener noreferrer" target="_blank"]] (advanced)
	59	+* [[Functions for Basic e-phys>>https://neuroimage.usc.edu/brainstorm/e-phys/functions||rel="noopener noreferrer" target="_blank"]] (advanced)
	60	+* [[Granger causality>>https://neuroimage.usc.edu/brainstorm/GrangerCausality||rel="noopener noreferrer" target="_blank"]] (advanced)
	61	+* [[Group analysis: Subject coregistration>>https://neuroimage.usc.edu/brainstorm/Tutorials/CoregisterSubjects||rel="noopener noreferrer" target="_blank"]] (advanced)
	62	+* [[How to write your own process>>https://neuroimage.usc.edu/brainstorm/Tutorials/TutUserProcess||rel="noopener noreferrer" target="_blank"]] (advanced)
	63	+* [[Human Connectome Project: Resting-state MEG>>https://neuroimage.usc.edu/brainstorm/Tutorials/HCP-MEG||rel="noopener noreferrer" target="_blank"]] (advanced)
	64	+* [[MEG current phantom (CTF)>>https://neuroimage.usc.edu/brainstorm/Tutorials/PhantomCtf||rel="noopener noreferrer" target="_blank"]] (advanced)
	65	+* [[MEG current phantom (Elekta-Neuromag)>>https://neuroimage.usc.edu/brainstorm/Tutorials/PhantomElekta||rel="noopener noreferrer" target="_blank"]] (advanced)
	66	+* [[MEG median nerve tutorial (CTF)>>https://neuroimage.usc.edu/brainstorm/Tutorials/MedianNerveCtf||rel="noopener noreferrer" target="_blank"]] (advanced)
	67	+* [[MEG visual tutorial: Group analysis (BIDS)>>https://neuroimage.usc.edu/brainstorm/Tutorials/VisualGroup||rel="noopener noreferrer" target="_blank"]] (advanced)
	68	+* [[MEG visual tutorial: Single subject (BIDS)>>https://neuroimage.usc.edu/brainstorm/Tutorials/VisualSingle||rel="noopener noreferrer" target="_blank"]] (advanced)
	69	+* [[Montage editor>>https://neuroimage.usc.edu/brainstorm/Tutorials/MontageEditor||rel="noopener noreferrer" target="_blank"]] (advanced)
	70	+* [[MRI Segmentation with CAT12>>https://neuroimage.usc.edu/brainstorm/Tutorials/SegCAT12||rel="noopener noreferrer" target="_blank"]] (advanced)
	71	+* [[MRI segmentation with CIVET>>https://neuroimage.usc.edu/brainstorm/Tutorials/SegCIVET||rel="noopener noreferrer" target="_blank"]] (advanced)
	72	+* [[MRI segmentation with FastSurfer>>https://neuroimage.usc.edu/brainstorm/Tutorials/SegFastSurfer||rel="noopener noreferrer" target="_blank"]] (advanced)
	73	+* [[NIRS data importation, visualization and response estimate in the optode space>>https://neuroimage.usc.edu/brainstorm/Tutorials/NIRSFingerTapping||rel="noopener noreferrer" target="_blank"]] (advanced)
	74	+* [[Plugins>>https://neuroimage.usc.edu/brainstorm/Tutorials/Plugins||rel="noopener noreferrer" target="_blank"]] (advanced)
	75	+* [[Real-time head-tracking for adjusting head position>>https://neuroimage.usc.edu/brainstorm/Tutorials/TutRealtime||rel="noopener noreferrer" target="_blank"]] (advanced)
	76	+* [[Realistic head model: FEM with DUNEuro>>https://neuroimage.usc.edu/brainstorm/Tutorials/Duneuro||rel="noopener noreferrer" target="_blank"]] (advanced)
	77	+* [[Resting state recordings from the OMEGA database>>https://neuroimage.usc.edu/brainstorm/Tutorials/RestingOmega||rel="noopener noreferrer" target="_blank"]] (advanced)
	78	+* [[Simulations>>https://neuroimage.usc.edu/brainstorm/Tutorials/Simulations||rel="noopener noreferrer" target="_blank"]] (advanced)
	79	+* [[Spectral Parameterization Resolved in Time (SPRiNT)>>https://neuroimage.usc.edu/brainstorm/Tutorials/SPRiNT||rel="noopener noreferrer" target="_blank"]] (advanced)
	80	+* [[Spike Sorting in Brainstorm>>https://neuroimage.usc.edu/brainstorm/e-phys/SpikeSorting||rel="noopener noreferrer" target="_blank"]] (advanced)
	81	+* [[SSP Cookbook>>https://neuroimage.usc.edu/brainstorm/Tutorials/SSPCookbook||rel="noopener noreferrer" target="_blank"]] (advanced)
	82	+* [[Synchronization with eye tracker (event transfer)>>https://neuroimage.usc.edu/brainstorm/Tutorials/EyetrackSynchro||rel="noopener noreferrer" target="_blank"]] (advanced)
	83	+* [[T1-MRI Segmentation with BrainSuite>>https://neuroimage.usc.edu/brainstorm/Tutorials/SegBrainSuite||rel="noopener noreferrer" target="_blank"]] (advanced)
	84	+* [[Tutorial - Head Motion>>https://neuroimage.usc.edu/brainstorm/Tutorials/HeadMotion||rel="noopener noreferrer" target="_blank"]] (advanced)
	85	+* [[Using BrainVISA>>https://neuroimage.usc.edu/brainstorm/Tutorials/SegBrainVisa||rel="noopener noreferrer" target="_blank"]] (advanced)
	86	+* [[Using FreeSurfer>>https://neuroimage.usc.edu/brainstorm/Tutorials/LabelFreeSurfer||rel="noopener noreferrer" target="_blank"]] (advanced)
	87	+* [[Using the anatomy templates>>https://neuroimage.usc.edu/brainstorm/Tutorials/DefaultAnatomy||rel="noopener noreferrer" target="_blank"]] (advanced)
	88	+* [[Virtual Fiber Tracks for Connectivity Visualization>>https://neuroimage.usc.edu/brainstorm/Tutorials/FiberConnectivity||rel="noopener noreferrer" target="_blank"]] (advanced)
	89	+* [[Yokogawa/KIT tutorial: Median nerve stimulation>>https://neuroimage.usc.edu/brainstorm/Tutorials/Yokogawa||rel="noopener noreferrer" target="_blank"]] (advanced)
	90	+
25	25	== Electrophysiology Analysis Toolkit ==
26	26
27	27	* [[Statistics of spike trains>>https://elephant.readthedocs.io/en/latest/tutorials/statistics.html||rel="noopener noreferrer" target="_blank"]] (beginner)
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32	32	* [[The Unitary Events Analysis>>https://elephant.readthedocs.io/en/latest/tutorials/unitary_event_analysis.html||rel="noopener noreferrer" target="_blank"]] (advanced)
33	33	* [[Time-domain Granger Causality>>https://elephant.readthedocs.io/en/latest/tutorials/granger_causality.html||rel="noopener noreferrer" target="_blank"]] (advanced)
34	34
	101	+== Hodgkin Huxley Neuron Builder ==
	102	+
	103	+* [[Hodgkin-Huxley Neuron Builder>>https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/HodgkinHuxleyNeuronBuilder/index.html||rel="noopener noreferrer" target="_blank"]] (advanced)
	104	+
35	35	== NEST ==
36	36
37	37	* [[Introduction to NEST: Simulating a single neuron>>https://nest-simulator.readthedocs.io/en/v3.3/tutorials/videos/one_neuron.html||rel="noopener noreferrer" target="_blank"]] (beginner)