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edited by adavison
on 2023/02/27 16:53
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To version 26.1
edited by abonard
on 2025/04/10 15:19
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1 1  (% class="box infomessage" id="welcome" style="text-align: center;" %)
2 2  (((
3 3  Welcome to the single entry point to tutorials for EBRAINS tools and services.
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6 6  
7 7  Some of the tutorials can also be accessed via the [[EBRAINS YouTube channel>>https://www.youtube.com/channel/UC6E796cVVR5Xrs2A5jJmleQ]].
8 8  
9 -=== Brain atlases ===
10 +=== **Atlases** ===
10 10  
11 -**[[VoluBA>>doc:.VoluBA.WebHome]]**
12 +**[[ilastik>>doc:.ilastik.WebHome]]**
13 +**[[Julich-Brain Cytoarchitectonic Atlas>>doc:.Julich-Brain Cytoarchitectonic Atlas.WebHome]]**
14 +**[[LocaliZoom>>doc:.LocaliZoom.WebHome]]**
15 +**[[MeshView>>doc:.MeshView.WebHome]]**
16 +**[[Nutil>>doc:.Nutil.WebHome]]**
17 +**[[QuickNII>>doc:.QuickNII.WebHome]]**
18 +**[[siibra-explorer>>doc:.siibra-explorer.WebHome]]**
19 +**[[siibra-python>>doc:.siibra-python.WebHome]]**
20 +**[[VisuAlign>>doc:.VisuAlign.WebHome]]**
21 +**[[voluba - Volumetric Brain Anchoring>>doc:.voluba - Volumetric Brain Anchoring.WebHome]]**
22 +**[[WebAlign>>doc:.WebAlign.WebHome]]**
23 +**[[WebWarp>>doc:.WebWarp.WebHome]]**
12 12  
13 -=== Data analysis ===
25 +=== **Medical Analytics** ===
14 14  
27 +**[[Bids Manager & Pipeline>>doc:.Bids Manager & Pipeline.WebHome]]**
15 15  **[[Brainstorm>>doc:.Brainstorm.WebHome]]**
16 -**[[Electrophysiology Analysis Toolkit>>doc:.Electrophysiology Analysis Toolkit.WebHome]]**
17 -**[[ilastik>>doc:.ilastik.WebHome]]**
18 18  
19 -=== Simulation ===
30 +=== **Modelling and Simulation** ===
20 20  
21 21  **[[Arbor>>doc:.Arbor.WebHome]]**
33 +**[[Arbor GUI>>doc:.Arbor GUI.WebHome]]**
22 22  **[[BluePyMM>>doc:.BluePyMM.WebHome]]**
23 23  **[[BluePyOpt>>doc:.BluePyOpt.WebHome]]**
36 +**[[BrainScaleS Operating System>>doc:.BrainScaleS Operating System.WebHome]]**
37 +**[[Electrophysiology Analysis Toolkit>>doc:.Electrophysiology Analysis Toolkit.WebHome]]**
24 24  **[[Hodgkin Huxley Neuron Builder>>doc:.Hodgkin Huxley Neuron Builder.WebHome]]**
25 -**[[NEST>>doc:.NEST.WebHome]]**
39 +**[[Local Field Potentials in Python>>doc:.Local Field Potentials in Python.WebHome]]**
40 +**[[NEST Desktop>>doc:.NEST Desktop.WebHome]]**
41 +**[[NEST Simulator>>doc:.NEST Simulator.WebHome]]**
26 26  **[[NESTML>>doc:.NESTML.WebHome]]**
27 27  **[[Neuron>>doc:.Neuron.WebHome]]**
44 +**[[Neurorobotics Platform>>doc:.Neurorobotics Platform.WebHome]]**
28 28  **[[PyNN>>doc:.PyNN.WebHome]]**
46 +**[[SpiNNaker Jupyter service>>doc:.SpiNNaker Jupyter service.WebHome]]**
47 +**[[sPyNNaker>>doc:.sPyNNaker.WebHome]]**
29 29  **[[The Virtual Brain>>doc:.The Virtual Brain.WebHome]]**
49 +**[[ViSimpl>>doc:.ViSimpl.WebHome]]**
30 30  
31 -=== Neurorobotics ===
51 +=== **FAIR data** ===
32 32  
33 -**[[Neurorobotics Platform>>doc:.Neurorobotics Platform.WebHome]]**
53 +**[[(Dataset) Excitability of mouse hippocampal CA1 pyramidal neurons during sustained (500 ms) strong depolarization>>doc:.(Dataset) Excitability of mouse hippocampal CA1 pyramidal neurons during sustained (500 ms) strong depolarization.WebHome]]**
54 +**[[(Dataset) Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates>>doc:.(Dataset) Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates.WebHome]]**
55 +**[[EBRAINS Knowledge Graph>>doc:.EBRAINS Knowledge Graph.WebHome]]**
56 +**[[EBRAINS Live Papers Builder>>doc:.EBRAINS Live Papers Builder.WebHome]]**
57 +**[[Electrophysiology Analysis Toolkit>>doc:.Electrophysiology Analysis Toolkit.WebHome]]**
34 34  
35 -=== Medical data analytics ===
59 +=== **Computing Infrastructure** ===
36 36  
37 -**[[Bids Manager & Pipeline>>doc:.Bids Manager & Pipeline.WebHome]]**
61 +**[[SpiNNaker Jupyter service>>doc:.SpiNNaker Jupyter service.WebHome]]**
62 +
63 +=== **Miscellaneous** ===
64 +
65 +**[[EBRAINS Live Papers Viewer>>doc:.EBRAINS Live Papers Viewer.WebHome]]**
66 +
67 +
68 +**Miscellaneous tutorials**
69 +
70 +**[[IPR, exploitation and translation of research - Lecture 7: Looking into the future using emerging trends: What are they and how do we identify them? Part 1>>https://www.youtube.com/watch?v=8j6klXkSv0s&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=13||rel=" noopener noreferrer" target="_blank"]]**
71 +**Level**: beginner(%%) **Type**: video presentation
72 +
73 +**[[Innovation management: Innovation management tools in the HBP and EBRAINS context - Part 2>>https://www.youtube.com/watch?v=9IUMUkrH_Vs&list=PLvAS8zldX4CjlNfu4tEIPc6uKWGzglHei||rel=" noopener noreferrer" target="_blank"]]**
74 +**Level**: beginner(%%) **Type**: video presentation
75 +
76 +**[[Technology Readiness Level Assessment Course>>https://www.humanbrainproject.eu/en/collaborate-hbp/innovation-industry/trl-assessment-course/||rel=" noopener noreferrer" target="_blank"]]**
77 +**Level**: beginner(%%) **Type**: video presentation
78 +
79 +**[[IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 2>>https://www.youtube.com/watch?v=iwTiZpRe9LE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=9||rel=" noopener noreferrer" target="_blank"]]**
80 +**Level**: beginner(%%) **Type**: video presentation
81 +
82 +**[[IRP, exploitaiton and translation of research course - Lecture 3: Basic elements in the patenting world Part 1>>https://www.youtube.com/watch?v=Ii-bJlLOhyE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=5||rel=" noopener noreferrer" target="_blank"]]**
83 +**Level**: -(%%) **Type**: video presentation
84 +
85 +**[[IPR, exploitation and translation of research course - Lecture 5: New innovation models at the interface between academia and industry Part 1>>https://www.youtube.com/watch?v=iwTiZpRe9LE&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=9||rel=" noopener noreferrer" target="_blank"]]**
86 +**Level**: beginner(%%) **Type**: video presentation
87 +
88 +**[[Intellectual Property Rights (IRP), translation & exploitation of research- Introduction to the courses>>https://www.youtube.com/watch?v=K6gvvRv289c&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu||rel=" noopener noreferrer" target="_blank"]]**
89 +**Level**: beginner(%%) **Type**: video presentation
90 +
91 +**[[IRP, exploitaiton and translation of research course - Lecture 1: Is your "Million Dollar Idea" a viable business concept?>>https://www.youtube.com/watch?v=W9kXSuQo9M0&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=3||rel=" noopener noreferrer" target="_blank"]]**
92 +**Level**: beginner(%%) **Type**: video presentation
93 +
94 +**[[IRP, exploitaiton and translation of research course - Lecture 2: Bottom-up research: The most critical skill in entrepreneurship>>https://www.youtube.com/watch?v=XZBMnUjelEQ&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=4||rel=" noopener noreferrer" target="_blank"]]**
95 +**Level**: beginner(%%) **Type**: video presentation
96 +
97 +**[[Innovation Funding Workshop>>https://youtu.be/JFxaoK2yMqI||rel=" noopener noreferrer" target="_blank"]]**
98 +**Level**: beginner(%%) **Type**: video tutorial
99 +
100 +**[[IPR, exploitation and translation of research course - Lecture 6: Transferring innovation from academy to industry Part 2>>https://www.youtube.com/watch?v=Js9-COrdFS0&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=12||rel=" noopener noreferrer" target="_blank"]]**
101 +**Level**: beginner(%%) **Type**: video presentation
102 +
103 +**[[IPR, exploitation and translation of research course - Lecture 4: Patents in the realm of neuroscience Part 2>>https://www.youtube.com/watch?v=ba9pQ3LqoHw&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu||rel=" noopener noreferrer" target="_blank"]]**
104 +**Level**: beginner(%%) **Type**: -
105 +
106 +**[[IRP, exploitaiton and translation of research course - Lecture 3: Basic elements in the patenting world Part 2>>https://www.youtube.com/watch?v=4TFb77VsmFQ&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=6||rel=" noopener noreferrer" target="_blank"]]**
107 +**Level**: beginner(%%) **Type**: video presentation
108 +
109 +**[[Plans for the exploitation of HBP technologies course>>https://www.humanbrainproject.eu/en/collaborate-hbp/innovation-industry/exploitation-plan-course/||rel=" noopener noreferrer" target="_blank"]]**
110 +**Level**: beginner(%%) **Type**: video tutorial
111 +
112 +**[[Key factors to successful exploitation of research results and technology transfer>>https://sos-ch-dk-2.exo.io/public-website-production/filer_public/47/7e/477eb33a-27ce-42f5-b4d3-620339864294/key_factors_innovation_and_tech_transfer.pdf||rel=" noopener noreferrer" target="_blank"]]**
113 +**Level**: beginner(%%) **Type**: slide deck
114 +
115 +**[[IPR, exploitation and translation of research - Lecture 7: Looking into the future using emerging trends: What are they and how do we identify them? Part 2>>https://www.youtube.com/watch?v=b0vOyHTW2Rc&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=14||rel=" noopener noreferrer" target="_blank"]]**
116 +**Level**: beginner(%%) **Type**: video presentation
117 +
118 +**[[IPR, exploitation and translation of research course - Lecture 4: Patents in the realm of neuroscience Part 1>>https://www.youtube.com/watch?v=8m-ucwJhtV4&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu||rel=" noopener noreferrer" target="_blank"]]**
119 +**Level**: beginner(%%) **Type**: video presentation
120 +
121 +**[[IPR, exploitation and translation of research course - Lecture 6: Transferring innovation from academy to industry Part 1>>https://www.youtube.com/watch?v=8FQzTR5aWA0&list=PLvAS8zldX4CjLAq5cpGG7cVtTC6n1lCtu&index=11||rel=" noopener noreferrer" target="_blank"]]**
122 +**Level**: beginner(%%) **Type**: video presentation
123 +
124 +**[[Innovation management: Innovation management tools in the HBP and EBRAINS context - Part 1>>https://www.youtube.com/watch?v=NNbwITmioEI&list=PLvAS8zldX4CjlNfu4tEIPc6uKWGzglHei||rel=" noopener noreferrer" target="_blank"]]**
125 +**Level**: beginner(%%) **Type**: video presentation
126 +
127 +