Wiki source code of Tutorial Index
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| author | version | line-number | content |
|---|---|---|---|
| 1 | This page is in development. Once ready it will be moved to a public location. | ||
| 2 | |||
| 3 | ~== Arbor == | ||
| 4 | |||
| 5 | ~* ~[~[Arbor: A detailed single cell model>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_detailed.html||rel="noopener noreferrer" target="_blank"]] | ||
| 6 | ~* ~[~[Arbor: A detailed single cell recipe>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_detailed_recipe.html||rel="noopener noreferrer" target="_blank"]] | ||
| 7 | ~* ~[~[Arbor: A ring network>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/network_ring.html||rel="noopener noreferrer" target="_blank"]] | ||
| 8 | ~* ~[~[Arbor: A simple dendrite>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_cable.html||rel="noopener noreferrer" target="_blank"]] | ||
| 9 | ~* ~[~[Arbor: A simple single cell model>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_model.html||rel="noopener noreferrer" target="_blank"]] | ||
| 10 | ~* ~[~[Arbor: A simple single cell recipe>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_recipe.html||rel="noopener noreferrer" target="_blank"]] | ||
| 11 | ~* ~[~[Arbor: A single cell model from the Allen Brain Atlas>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_allen.html||rel="noopener noreferrer" target="_blank"]] | ||
| 12 | ~* ~[~[Arbor: A single cell model from the BluePyOpt Cell Optimisation Library>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/single_cell_bluepyopt.html||rel="noopener noreferrer" target="_blank"]] | ||
| 13 | ~* ~[~[Arbor: Distributed ring network (MPI)>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/network_ring_mpi.html||rel="noopener noreferrer" target="_blank"]] | ||
| 14 | ~* ~[~[Arbor: Extracellular signals (LFPykit)>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/probe_lfpykit.html||rel="noopener noreferrer" target="_blank"]] | ||
| 15 | ~* ~[~[Arbor: GPU and profiling>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/network_ring_gpu.html||rel="noopener noreferrer" target="_blank"]] | ||
| 16 | ~* ~[~[Arbor: Spike Timing-dependent Plasticity Curve>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/calcium_stdp_curve.html||rel="noopener noreferrer" target="_blank"]] | ||
| 17 | ~* ~[~[Arbor: Two cells connected via a gap junction>>https:~/~/docs.arbor-sim.org/en/stable/tutorial/network_two_cells_gap_junctions.html||rel="noopener noreferrer" target="_blank"]] | ||
| 18 | |||
| 19 | ~== Electrophysiology Analysis Toolkit == | ||
| 20 | |||
| 21 | ~* ~[~[ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/asset.html||rel="noopener noreferrer" target="_blank"]] | ||
| 22 | ~* ~[~[Gaussian Process Factor Analysis>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/gpfa.html||rel="noopener noreferrer" target="_blank"]] | ||
| 23 | ~* ~[~[Parallel>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/parallel.html||rel="noopener noreferrer" target="_blank"]] | ||
| 24 | ~* ~[~[Spike Pattern Detection and Evaluation (SPADE)>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/spade.html||rel="noopener noreferrer" target="_blank"]] | ||
| 25 | ~* ~[~[Statistics of spike trains>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/statistics.html||rel="noopener noreferrer" target="_blank"]] | ||
| 26 | ~* ~[~[The Unitary Events Analysis>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/unitary_event_analysis.html||rel="noopener noreferrer" target="_blank"]] | ||
| 27 | ~* ~[~[Time-domain Granger Causality>>https:~/~/elephant.readthedocs.io/en/latest/tutorials/granger_causality.html||rel="noopener noreferrer" target="_blank"]] | ||
| 28 | |||
| 29 | ~== PyNN == | ||
| 30 | |||
| 31 | ~* ~[~[Building and simulating a simple model>>https:~/~/youtu.be/zBLNfJiEvRc||rel="noopener noreferrer" target="_blank"]] | ||
| 32 | ~* ~[~[Installing PyNN on a Linux system>>https:~/~/youtu.be/BZB7xKUK8Vc||rel="noopener noreferrer" target="_blank"]] | ||
| 33 | |||
| 34 | ~== VoluBA == | ||
| 35 | |||
| 36 | ~* ~[~[Day 2 - 02. VoluBA (Sebastian Bludau)>>https:~/~/youtu.be/l_7ILe6_2Cs||rel="noopener noreferrer" target="_blank"]] | ||
| 37 | |||
| 38 | ~== The Virtual Brain == | ||
| 39 | |||
| 40 | ~* ~[~[TVB: Brain stimulation in The Virtual Brain>>https:~/~/youtu.be/mskxBYKoeq0||rel="noopener noreferrer" target="_blank"]] | ||
| 41 | ~* ~[~[TVB: Building Your Own Brain Network Model>>https:~/~/docs.thevirtualbrain.org/tutorials/tutorial_1_BuildingYourOwnBrainNetworkModel.html#tutorial-1-buildingyourownbrainnetworkmodel||rel="noopener noreferrer" target="_blank"]] | ||
| 42 | ~* ~[~[TVB: Clinical Applications - Stroke Recovery & Dementia>>https:~/~/youtu.be/ZA2UuHZiPnM||rel="noopener noreferrer" target="_blank"]] | ||
| 43 | ~* ~[~[TVB: Evoked Responses in the Visual Cortex>>https:~/~/nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s4_EvokedResponsesInTheVisualCortex.ipynb||rel="noopener noreferrer" target="_blank"]] | ||
| 44 | ~* ~[~[TVB: Exploring a model>>https:~/~/nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s3_exploring_a_model.ipynb||rel="noopener noreferrer" target="_blank"]] | ||
| 45 | ~* ~[~[TVB: Getting Started>>https:~/~/docs.thevirtualbrain.org/tutorials/tutorial_0_GettingStarted.html#tutorial-0-gettingstarted||rel="noopener noreferrer" target="_blank"]] | ||
| 46 | ~* ~[~[TVB: Hands-On: Modeling stroke brain>>https:~/~/youtu.be/BDj9MLpt0io||rel="noopener noreferrer" target="_blank"]] | ||
| 47 | ~* ~[~[TVB: Human Brain Project (HBP) TVB-NEST co-simulation>>https:~/~/youtu.be/dUuQe_SI5lE||rel="noopener noreferrer" target="_blank"]] | ||
| 48 | ~* ~[~[TVB: Import Virtual Brain ready data into TVB and create a brain model>>https:~/~/youtu.be/OEOCFyiJgBM||rel="noopener noreferrer" target="_blank"]] | ||
| 49 | ~* ~[~[TVB: Integrated workflows: Image processing pipeline>>https:~/~/youtu.be/uUkq0K-xM0Q||rel="noopener noreferrer" target="_blank"]] | ||
| 50 | ~* ~[~[TVB: Modeling brain dynamics in brain tumor patients using The Virtual Brain>>https:~/~/youtu.be/t9xyoHxTAmQ||rel="noopener noreferrer" target="_blank"]] | ||
| 51 | ~* ~[~[TVB: Modeling Epilepsy>>https:~/~/nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s6_ModelingEpilepsy.ipynb||rel="noopener noreferrer" target="_blank"]] | ||
| 52 | ~* ~[~[TVB: Modelling Epilepsy with The Virtual Brain>>https:~/~/youtu.be/YrSxnMo6Lr8||rel="noopener noreferrer" target="_blank"]] | ||
| 53 | ~* ~[~[TVB: My first simulation with The Virtual Brain>>https:~/~/youtu.be/326iA14UVzY||rel="noopener noreferrer" target="_blank"]] | ||
| 54 | ~* ~[~[TVB: Population Models in The Virtual Brain (TVB) and the Phase Plane>>https:~/~/youtu.be/Zo0HGwLHN3E||rel="noopener noreferrer" target="_blank"]] | ||
| 55 | ~* ~[~[TVB: Region simulation tutorial>>https:~/~/nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s1_region_simulation.ipynb||rel="noopener noreferrer" target="_blank"]] | ||
| 56 | ~* ~[~[TVB: Resting State Networks>>https:~/~/nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s5_ModelingRestingStateNetworks.ipynb||rel="noopener noreferrer" target="_blank"]] | ||
| 57 | ~* ~[~[TVB: Simulating The Virtual Mouse Brain (TVMB)>>https:~/~/youtu.be/gxhJku8KRYY||rel="noopener noreferrer" target="_blank"]] | ||
| 58 | ~* ~[~[TVB: Simulating The Virtual Mouse Brain (TVMB) (Copy)>>https:~/~/youtu.be/gxhJku8KRYY||rel="noopener noreferrer" target="_blank"]] | ||
| 59 | ~* ~[~[TVB: Surface simulation tutorial>>https:~/~/nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s2_surface_simulation.ipynb||rel="noopener noreferrer" target="_blank"]] | ||
| 60 | ~* ~[~[TVB: Surface-based simulations and deep brain stimulations>>https:~/~/youtu.be/ZXLrvHc24xE||rel="noopener noreferrer" target="_blank"]] | ||
| 61 | ~* ~[~[TVB: The Bayesian Virtual Epileptic Patient (BVEP)>>https:~/~/youtu.be/4XghviA_1Uk||rel="noopener noreferrer" target="_blank"]] | ||
| 62 | ~* ~[~[TVB: TVB to NEST multi-scale simulation>>https:~/~/youtu.be/PppyGzWUxuE||rel="noopener noreferrer" target="_blank"]] |