This page is in development. Once ready it will be moved to a public location.
Arbor
- A simple single cell model (beginner)
- A detailed single cell model (advanced)
- A detailed single cell recipe (advanced)
- A ring network (advanced)
- A simple dendrite (advanced)
- A simple single cell recipe (advanced)
- A single cell model from the Allen Brain Atlas (advanced)
- A single cell model from the BluePyOpt Cell Optimisation Library (advanced)
- Distributed ring network (MPI) (advanced)
- Extracellular signals (LFPykit) (advanced)
- GPU and profiling (advanced)
- Spike Timing-dependent Plasticity Curve (advanced)
- Two cells connected via a gap junction (advanced)
Electrophysiology Analysis Toolkit
- Statistics of spike trains (beginner)
- ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains (advanced)
- Gaussian Process Factor Analysis (advanced)
- Parallel (advanced)
- Spike Pattern Detection and Evaluation (SPADE) (advanced)
- The Unitary Events Analysis (advanced)
- Time-domain Granger Causality (advanced)
PyNN
- Building and simulating a simple model (beginner)
- Installing PyNN on a Linux system (beginner)
The Virtual Brain
- Building Your Own Brain Network Model (beginner)
- Getting Started (beginner)
- My first simulation with The Virtual Brain (beginner)
- Population Models in The Virtual Brain (TVB) and the Phase Plane (beginner)
- Brain stimulation in The Virtual Brain (advanced)
- Clinical Applications - Stroke Recovery & Dementia (advanced)
- Evoked Responses in the Visual Cortex (advanced)
- Exploring a model (advanced)
- Hands-On: Modeling stroke brain (advanced)
- Human Brain Project (HBP) TVB-NEST co-simulation (advanced)
- Import Virtual Brain ready data into TVB and create a brain model (advanced)
- Integrated workflows: Image processing pipeline (advanced)
- Modeling brain dynamics in brain tumor patients using The Virtual Brain (advanced)
- Modeling Epilepsy (advanced)
- Modelling Epilepsy with The Virtual Brain (advanced)
- Region simulation tutorial (advanced)
- Resting State Networks (advanced)
- Simulating The Virtual Mouse Brain (TVMB) (advanced)
- Simulating The Virtual Mouse Brain (TVMB) (Copy) (advanced)
- Surface simulation tutorial (advanced)
- Surface-based simulations and deep brain stimulations (advanced)
- The Bayesian Virtual Epileptic Patient (BVEP) (advanced)
- TVB to NEST multi-scale simulation (advanced)
- TVB: Modeling Epilepsy (advanced)
- TVB: Resting State Networks (advanced)