• Beginner 

• Advanced 

Beginner

QUINT Workflow – Atlas-based quantification and spatial analysis

Level: beginner  Type: video tutorial

QUINT workflow video tutorial

Level: beginner  Type: video tutorial

After attending this tutorial, learners will know how to use the QUINT workflow to quantify and analyse labelled features in a series of histological images of rodent brain sections within a known atlas space.  They will be able to use the QuickNII and VisuAlign software are used for precise image registration, and the ilastik software for efficient identification of labelled objects. Finally, learners will know to use the Nutil tool to quantify features per atlas region.

Advanced

EBRAINS Atlases - QUINT workflow Tutorial

Level: advanced  Type: video tutorial