Last modified by mhashemi on 2025/03/12 11:20
From version 12.1
edited by petkoski
on 2024/05/21 11:16
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To version 10.1
edited by petkoski
on 2024/05/21 11:06
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14 14  (((
15 15  = What can I find here? =
16 16  
17 -This collab contains access to the notebooks and reading materials that will be used during the EBRAINS Baltic-Nordic summer school 2024 [[https:~~/~~/lsmu.lt/en/events/ebrains/>>https://lsmu.lt/en/events/ebrains/]].
17 +* A current topic in system neuroscience literature is the presence of brain activity in the absence of a task condition. These task-negative, spontaneous fluctuations occur in the so-called **rest state**, and a recurring theme of these fluctuations is that they have a network structure. Because TVB uses the structural connectivity of the brain as the backbone for simulating spontaneous activity, resting state activity and its network structure is a prime candidate for modeling in TVB.
18 18  
19 -It will allow users to build whole-brain network models with TVB.
20 -
21 -We will begin wit the [[First steps of TVB>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/1_TVB_First_steps.ipynb||style="background-color: rgb(255, 255, 255);"]], where we will describe the building blocks of TVB through the paradigm of resting state activity. This will be followed by [[Modelling Epilepsy>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/2_TVB_Modelling_Epilepsy.ipynb||style="background-color: rgb(255, 255, 255);"]], where seizure propagation will be modeled. Finally there is one tutorial describing deeper analysis of [[BOLD monitors>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials/3_TVB_BOLD_digging_deeper.ipynb||style="background-color: rgb(255, 255, 255);"]]. These can be all found in the following EBRAINS lab:
22 -
23 -[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20tutorial%3A%20first%20steps/tvb_tutorials]]
24 -
25 -= Requirements =
26 -
27 -School participants should have EBRAINS accounts in order to be able to access and work on the tutorials.
28 -
29 -They are also advised to install TVB locally in case there are issues with the connection. After installation from the following link  [[https:~~/~~/www.thevirtualbrain.org/tvb/zwei/brainsimulator-software>>https://www.thevirtualbrain.org/tvb/zwei/brainsimulator-software||style="background-color: rgb(255, 255, 255);"]] users will have access to many more tutorials.
30 -
31 31  = Other tutorials =
32 32  
33 33  In addition to these noptebooks, we also refer to the readers to the collab for the Showcase 1 of HBP: "Degeneracy in neuroscience - when is Big Data big enough"