TVB for brain states and pathological brain dynamics
Emre Baspinar and Damien Depannemaecker
What can I find here?
This collab contains the materials which will be used during the hands-on session on 4 June 2024, during EBRAINS Brain Simulation Workshop taking place in Bilbao: https://www.bcamath.org/events/ebrains2024/en/.
The objective of this hands-on session is to create a familiarity of TVB for the participant by performing simulations related to different brain states and epileptic dynamics. At the beginning, we will describe the TVB framework and its building blocks. Then, in Part I, we will see a mean-field framework modeling neuronal population dynamics. We will use this framework to simulate brain states at population level. In Part II, we will see a generalization of this framework to the whole-brain scale via TVB. In Part III, we will see an example epileptic scenario of seizure propagation by using TVB. All these parts can be found in the drive, and they are accessible in the lab.
Requirements
Access to the notebooks and materials requires to have an EBRAINS account.
Participants are also suggested to download the materials and install TVB locally in case of connection issues. The installation can be done via the following link: https://www.thevirtualbrain.org/tvb/zwei/brainsimulator-software .
References
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