Fast_TVB
Last modified by michaels on 2022/05/12 14:31
High-speed parallel brain network simulation
A fast implementation of The Virtual Brain brain network simulator
Quick links
What can I find here?
- an IPython notebook that describes how to
- pull the TVB-C container into one of the associated supercomputers using PyUnicore
- upload model data to the supercomputer
- set up and run simulations
- download simulation results
How do I use it?
- the simulation code is implemented as a Docker container
- the container is executed on supercomputers and operated via IPython notebooks
- Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
- To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
- Then, head over to https://lab.ebrains.eu/ to edit and run your notebook.
- Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
Metadata
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Publications using Fast_TVB
- https://www.ncbi.nlm.nih.gov/pubmed/29308767
- https://www.ncbi.nlm.nih.gov/pubmed/32194282
- https://www.ncbi.nlm.nih.gov/pubmed/29911173
- https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020
- https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116
- https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018
- https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212