High-speed parallel brain network simulation

A fast implementation of The Virtual Brain brain network simulator

Direct link to notebook

Quick links

• TVB on EBRAINS (Short Version)
• TVB on EBRAINS (Long Version)
• TVB on EBRAINS (Mini Videos)
• User Story

What can I find here?

• an IPython notebook that describes how to
  • pull the TVB-C container into one of the associated supercomputers using PyUnicore
  • upload model data to the supercomputer
  • set up and run simulations
  • download simulation results

How do I use it?

• the simulation code is implemented as a Docker container
• the container is executed on supercomputers and operated via IPython notebooks
• Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
• To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
• Then, head over to https://lab.ebrains.eu/ to edit and run your notebook.
• Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"

Metadata

Publications using Fast_TVB

• https://www.ncbi.nlm.nih.gov/pubmed/29308767
• https://www.ncbi.nlm.nih.gov/pubmed/32194282
• https://www.ncbi.nlm.nih.gov/pubmed/29911173
• https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020
• https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116
• https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018
• https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212