Last modified by puchades on 2025/02/13 10:43
From version 21.1
edited by puchades
on 2023/06/21 10:55
Change comment: Uploaded new attachment "create collab.png", version {1}
To version 24.1
edited by puchades
on 2023/06/21 10:58
Change comment: There is no comment for this version

Summary

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... ... @@ -29,7 +29,7 @@
29 29  
30 30  === Use the "QUINT image creator" app ===
31 31  
32 -**~1. Select images to ingest**
32 +**2a. Select images to ingest**
33 33  
34 34  Click on your images in order to select them and press the "create brain from selection" button. Choose a name for your serie.
35 35  
... ... @@ -39,14 +39,16 @@
39 39  
40 40  Click on the "View Brain" button in order to preview your images.
41 41  
42 +Now go to the WebAlign app in order to start the registration to atlas.
43 +
42 42  [[image:Screenshot create_brain app.png]]
43 43  
44 44  
45 -=== Use Image service app ===
47 +=== Use Image service app (alt.) ===
46 46  
47 -**~1. Start the Image service UI from your webapp**
49 +**2b. Start the Image service UI from your webapp**
48 48  
49 -**2. Fill in the requested information:**
51 +* ** Fill in the requested information:**
50 50  
51 51   - type or paste the URL of the dataset folder containing the images. //Note!// the name of the collab supports only hyphens.
52 52  
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60 60  
61 61   - allow the image service to access your bucket
62 62  
63 -[[image:Skjermbilde 2022-02-08 103443.png||height="199" width="500"]]
65 +[[[[image:Skjermbilde 2022-02-08 103443.png||height="199" width="500"]]>>attach:Skjermbilde 2022-02-08 103443.png]]
64 64  
65 65  - Store your results: Choose "create a new collab" where your ingested chunks will be stored in the bucket. This option is preferred in order not to overload the Bucket of your current  collab. Give a name to your Bucket as well as a name for the  collab (bucket slug) (see this illustration for more info)
66 66  
67 -[[image:create collab.png||height="427" width="900"]]
69 +[[image:create collab.png]]
68 68  
69 69  - Customize your ingestion:
70 70  
71 71   - give a name to your ingestion in the "description of ingestion" field.
72 72  
73 -**3. For obtaining chunks in DZI format  (compatible with WebAlign),** choose "2D" and "not stack of Images".
75 +* ** For obtaining chunks in DZI format  (compatible with WebAlign),** choose "2D" and "not stack of Images".
76 +* ** Click //"preview"// in order to preview your task**
77 +* ** Click //"create task"//  to launch your ingestion**
78 +* ** Checking results in the Main UI page**
74 74  
75 -**4. Click //"preview"// in order to preview your task**
76 -
77 -**5. Click //"create task"//  to launch your ingestion**
78 -
79 -**6. Checking results in the Main UI page**
80 -
81 81  Press "Task" in the higher right corner of the window.
82 82  
83 83  When creating the task, a red banner is displayed in the "Create Task" view if something goes wrong for instance.