Last modified by puchades on 2025/02/13 10:43
From version 24.1
edited by puchades
on 2023/06/21 10:58
Change comment: There is no comment for this version
To version 16.1
edited by puchades
on 2023/06/21 10:28
Change comment: There is no comment for this version

Summary

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29 29  
30 30  === Use the "QUINT image creator" app ===
31 31  
32 -**2a. Select images to ingest**
32 +**~1. Select images to ingest**
33 33  
34 -Click on your images in order to select them and press the "create brain from selection" button. Choose a name for your serie.
34 +Shift-Click on your images in order to select them and press the "create brain from selection" button. Choose a name for your serie.
35 35  
36 36  The App will automatically generate the files for you. Monitor the progress under the "processing" tab and on the two dashboards on the left.
37 37  
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39 39  
40 40  Click on the "View Brain" button in order to preview your images.
41 41  
42 -Now go to the WebAlign app in order to start the registration to atlas.
42 +=== Use Image service app ===
43 43  
44 -[[image:Screenshot create_brain app.png]]
44 +**~1. Start the Image service UI from your webapp**
45 45  
46 +**2. Fill in the requested information:**
46 46  
47 -=== Use Image service app (alt.) ===
48 -
49 -**2b. Start the Image service UI from your webapp**
50 -
51 -* ** Fill in the requested information:**
52 -
53 53   - type or paste the URL of the dataset folder containing the images. //Note!// the name of the collab supports only hyphens.
54 54  
55 55  E.g. https:~/~/data-proxy.ebrains.eu/api/v1/buckets/name-of-my-collab
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62 62  
63 63   - allow the image service to access your bucket
64 64  
65 -[[[[image:Skjermbilde 2022-02-08 103443.png||height="199" width="500"]]>>attach:Skjermbilde 2022-02-08 103443.png]]
60 +[[image:Skjermbilde 2022-02-08 103443.png||height="199" width="500"]]
66 66  
67 67  - Store your results: Choose "create a new collab" where your ingested chunks will be stored in the bucket. This option is preferred in order not to overload the Bucket of your current  collab. Give a name to your Bucket as well as a name for the  collab (bucket slug) (see this illustration for more info)
68 68  
69 -[[image:create collab.png]]
64 +[[image:create collab.png||height="427" width="900"]]
70 70  
71 71  - Customize your ingestion:
72 72  
73 73   - give a name to your ingestion in the "description of ingestion" field.
74 74  
75 -* ** For obtaining chunks in DZI format  (compatible with WebAlign),** choose "2D" and "not stack of Images".
76 -* ** Click //"preview"// in order to preview your task**
77 -* ** Click //"create task"//  to launch your ingestion**
78 -* ** Checking results in the Main UI page**
70 +**3. For obtaining chunks in DZI format  (compatible with WebAlign),** choose "2D" and "not stack of Images".
79 79  
72 +**4. Click //"preview"// in order to preview your task**
73 +
74 +**5. Click //"create task"//  to launch your ingestion**
75 +
76 +**6. Checking results in the Main UI page**
77 +
80 80  Press "Task" in the higher right corner of the window.
81 81  
82 82  When creating the task, a red banner is displayed in the "Create Task" view if something goes wrong for instance.
Screenshot create_brain app.png
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