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110	110	~1. Start a new registration by pressing "create new series", the UI will ask you for the name of the collab where DZI chunks are stored. E.g. my-collab-name
111	111
112		-2. WebAlign will search for DZI files and list those found.
	112	+2. WebAlign will search for DZIP files and list those found.
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114	114	3. Enter a name for the descriptor json file which will be created and will contain your anchoring information.
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118	118	5. Press //"create"//. The main window will now display WebAlign. This step can take some time.
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	120	+[[image:create series webAlign.png]]
	121	+
	122	+=== Opening an EBRAINS dataset ===
	123	+
	124	+(% class="wikigeneratedid" %)
	125	+If you would like to work with an EBRAINS dataset, fetch the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>https://search.kg.ebrains.eu]] )and paste it in the "Import LocaliZoom link" tab.
	126	+
	127	+(% class="wikigeneratedid" %)
	128	+These series already have been registered to a reference atlas, so this gives you a starting point. The linear registrations obtained with WebAlign can be refined using WebWarp.
	129	+
120	120	=== Registration instructions ===
121	121
122	122	**Short keys**
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195	195	Drag the midpoint around to move the cut.
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197		-Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint)
	207	+Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint).
	208	+
	209	+== **How to use WebWarp** ==
	210	+
	211	+WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases. Webwarp is compatible with registration performed with the WebAlign tool. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system.
	212	+
	213	+Online user manual: [[https:~~/~~/webwarp.readthedocs.io/en/latest/>>https://webwarp.readthedocs.io/en/latest/]]
	214	+
	215	+The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
	216	+
	217	+=== Opening a sample dataset ===
	218	+
	219	+Demo dataset is loaded using the file: **demo_mouse_data.waln**
	220	+
	221	+You can see the result of a finished anchoring by choosing the file: **demo_mouse_data.wwrp**
	222	+
	223	+

create series webAlign.png

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	1	+XWiki.puchades

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