Last modified by puchades on 2025/02/13 10:43

From version 27.1
edited by puchades
on 2023/06/21 11:13
Change comment: There is no comment for this version
To version 33.2
edited by puchades
on 2023/06/21 15:46
Change comment: There is no comment for this version

Summary

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119 119  
120 120  [[image:create series webAlign.png]]
121 121  
122 +=== Opening an EBRAINS dataset ===
122 122  
124 +(% class="wikigeneratedid" %)
125 +If you would like to work with an EBRAINS dataset, fetch the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>https://search.kg.ebrains.eu]] )and paste it in the "Import LocaliZoom link" tab.
126 +
127 +(% class="wikigeneratedid" %)
128 +These series already have been registered to a reference atlas, so this gives you a starting point. The linear registrations obtained with WebAlign can be refined using WebWarp.
129 +
123 123  === Registration instructions ===
124 124  
125 125  **Short keys**
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197 197  
198 198  Drag the midpoint around to move the cut.
199 199  
200 -Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint)
207 +Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint).
208 +
209 +== **How to use WebWarp** ==
210 +
211 +WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases. Webwarp is compatible with registration performed with the WebAlign tool. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system.
212 +
213 +Online user manual: [[https:~~/~~/webwarp.readthedocs.io/en/latest/>>https://webwarp.readthedocs.io/en/latest/]]
214 +
215 +The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
216 +
217 +=== Opening a sample dataset ===
218 +
219 +Demo dataset is loaded using the file: **demo_mouse_data.waln**
220 +
221 +You can see the result of a finished anchoring by choosing the file: **demo_mouse_data.wwrp**
222 +
223 +