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120	120	[[image:create series webAlign.png]]
121	121
	122	+=== Opening an EBRAINS dataset ===
122	122
123	123	(% class="wikigeneratedid" %)
124		-=== Opening a KG dataset ===
	125	+If you would like to work with an EBRAINS dataset, fetch the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>https://search.kg.ebrains.eu]] )and paste it in the "Import LocaliZoom link" tab.
125	125
126	126	(% class="wikigeneratedid" %)
127		-If you would like to work with a KG dataset, fetch the LocaliZoom link from the KG dataset card and paste it in the "Import LocaliZoom link" tab.
128		-
129		-(% class="wikigeneratedid" %)
130	130	These series already have been registered to a reference atlas, so this gives you a starting point. The linear registrations obtained with WebAlign can be refined using WebWarp.
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132		-(% class="wikigeneratedid" %)
133		-=== ===
134		-
135		-(% class="wikigeneratedid" %)
136		-=== ===
137		-
138	138	=== Registration instructions ===
139	139
140	140	**Short keys**
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212	212
213	213	Drag the midpoint around to move the cut.
214	214
215		-Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint)
	207	+Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint).
	208	+
	209	+== **How to use WebWarp** ==
	210	+
	211	+WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases. Webwarp is compatible with registration performed with the WebAlign tool. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system.
	212	+
	213	+Online user manual: [[https:~~/~~/webwarp.readthedocs.io/en/latest/>>https://webwarp.readthedocs.io/en/latest/]]
	214	+
	215	+The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
	216	+
	217	+=== Opening a sample dataset ===
	218	+
	219	+Demo dataset is loaded using the file: **demo_mouse_data.waln**
	220	+
	221	+You can see the result of a finished anchoring by choosing the file: **demo_mouse_data.wwrp**
	222	+
	223	+=== Opening a private dataset ===
	224	+
	225	+1. Navigate to the WebWarp app in the left-hand panel: all the .waln files located in the Bucket are displayed on the WebWarp main page.
	226	+1. Select the waln file corresponding to your result from the WebAlign image registration.
	227	+1. Wait for the images to load: this may take some time.
	228	+
	229	+=== Opening an EBRAINS dataset ===
	230	+
	231	+If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
	232	+
	233	+
	234	+== **How to use LocaliZoom** ==
	235	+
	236	+
	237	+
	238	+
	239	+== **How to use LocaliZoom** ==
	240	+
	241	+
	242	+