Last modified by puchades on 2025/02/13 10:43
From version 30.1
edited by puchades
on 2023/06/21 11:23
Change comment: There is no comment for this version
To version 33.2
edited by puchades
on 2023/06/21 15:46
Change comment: There is no comment for this version

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119 119  
120 120  [[image:create series webAlign.png]]
121 121  
122 -=== Opening a KG dataset ===
122 +=== Opening an EBRAINS dataset ===
123 123  
124 124  (% class="wikigeneratedid" %)
125 -If you would like to work with a KG dataset, fetch the LocaliZoom link from the KG dataset card and paste it in the "Import LocaliZoom link" tab.
125 +If you would like to work with an EBRAINS dataset, fetch the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>https://search.kg.ebrains.eu]] )and paste it in the "Import LocaliZoom link" tab.
126 126  
127 127  (% class="wikigeneratedid" %)
128 128  These series already have been registered to a reference atlas, so this gives you a starting point. The linear registrations obtained with WebAlign can be refined using WebWarp.
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204 204  
205 205  Drag the midpoint around to move the cut.
206 206  
207 -Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint)
207 +Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint).
208 +
209 +== **How to use WebWarp** ==
210 +
211 +WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases. Webwarp is compatible with registration performed with the WebAlign tool. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system.
212 +
213 +Online user manual: [[https:~~/~~/webwarp.readthedocs.io/en/latest/>>https://webwarp.readthedocs.io/en/latest/]]
214 +
215 +The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
216 +
217 +=== Opening a sample dataset ===
218 +
219 +Demo dataset is loaded using the file: **demo_mouse_data.waln**
220 +
221 +You can see the result of a finished anchoring by choosing the file: **demo_mouse_data.wwrp**
222 +
223 +