Changes for page 1. Setting up the working environment
Last modified by puchades on 2025/02/13 10:43
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... ... @@ -119,10 +119,10 @@ 119 119 120 120 [[image:create series webAlign.png]] 121 121 122 -=== Opening a KGdataset ===122 +=== Opening an EBRAINS dataset === 123 123 124 124 (% class="wikigeneratedid" %) 125 -If you would like to work with a KGdataset, fetch the LocaliZoom link from the KG dataset card and paste it in the "Import LocaliZoom link" tab.125 +If you would like to work with an EBRAINS dataset, fetch the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>https://search.kg.ebrains.eu]] )and paste it in the "Import LocaliZoom link" tab. 126 126 127 127 (% class="wikigeneratedid" %) 128 128 These series already have been registered to a reference atlas, so this gives you a starting point. The linear registrations obtained with WebAlign can be refined using WebWarp. ... ... @@ -206,6 +206,18 @@ 206 206 207 207 Drag anywhere else to rotate the cut (inside the given standard plane, around the midpoint). 208 208 209 +== **How to use WebWarp** == 209 209 211 +WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases. Webwarp is compatible with registration performed with the WebAlign tool. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system. 210 210 211 -== **How to use WebAlign** == 213 +Online user manual: [[https:~~/~~/webwarp.readthedocs.io/en/latest/>>https://webwarp.readthedocs.io/en/latest/]] 214 + 215 +The view can be magnified using the 4-arrow "X" symbol in the top-right corner. 216 + 217 +=== Opening a sample dataset === 218 + 219 +Demo dataset is loaded using the file: **demo_mouse_data.waln** 220 + 221 +You can see the result of a finished anchoring by choosing the file: **demo_mouse_data.wwrp** 222 + 223 +