Last modified by puchades on 2025/02/13 10:43
From version 33.2
edited by puchades
on 2023/06/21 15:46
Change comment: There is no comment for this version
To version 38.1
edited by puchades
on 2023/06/22 09:38
Change comment: There is no comment for this version

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3 3  1. [[Register>>url:https://ebrains.eu/register/]] for an EBRAINS account, login, and set up a [[private collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/]].
4 4  1. Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket.
5 5  1. Give users Admin, Editor or Viewer rights by clicking** Team** in the navigation panel.
6 -1. Install WebAlign, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)
6 +1. Install WebAlign, WebWarp, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)
7 7  
8 8  == How to install Collaboratory Apps ==
9 9  
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220 220  
221 221  You can see the result of a finished anchoring by choosing the file: **demo_mouse_data.wwrp**
222 222  
223 +=== Opening a private dataset ===
224 +
225 +1. Navigate to the WebWarp app in the left-hand panel: all the .waln files located in the Bucket are displayed on the WebWarp main page.
226 +1. Select the waln file corresponding to your result from the WebAlign image registration.
227 +1. Wait for the images to load: this may take some time.
228 +
229 +=== Opening an EBRAINS dataset ===
230 +
231 +If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
232 +
233 +
234 +== **How to use LocaliZoom** ==
235 +
236 +LocaliZoom is a web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases. LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space.
237 +
238 +Online Manual: [[https:~~/~~/localizoom.readthedocs.io/en/latest/>>https://localizoom.readthedocs.io/en/latest/]]
239 +
240 +The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
241 +
242 +=== Opening a sample dataset ===
243 +
244 + A demo dataset is loaded using the file: demo_mouse_data_lz
245 +
246 +
247 +
223 223  
249 +
250 +== **How to use MeshView** ==
251 +
252 +
253 +