Changes for page 1. Setting up the working environment
Last modified by puchades on 2025/02/13 10:43
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... ... @@ -3,7 +3,7 @@ 3 3 1. [[Register>>url:https://ebrains.eu/register/]] for an EBRAINS account, login, and set up a [[private collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/]]. 4 4 1. Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket. 5 5 1. Give users Admin, Editor or Viewer rights by clicking** Team** in the navigation panel. 6 -1. Install WebAlign, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below) 6 +1. Install WebAlign, WebWarp, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below) 7 7 8 8 == How to install Collaboratory Apps == 9 9 ... ... @@ -233,10 +233,21 @@ 233 233 234 234 == **How to use LocaliZoom** == 235 235 236 +LocaliZoom is a web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases. LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space. 236 236 238 +Online Manual: [[https:~~/~~/localizoom.readthedocs.io/en/latest/>>https://localizoom.readthedocs.io/en/latest/]] 239 + 240 +The view can be magnified using the 4-arrow "X" symbol in the top-right corner. 241 + 242 +=== Opening a sample dataset === 243 + 244 + A demo dataset is loaded using the file: demo_mouse_data_lz 245 + 246 + 247 + 237 237 238 238 239 -== **How to use LocaliZoom** ==250 +== **How to use MeshView** == 240 240 241 241 242 242