Changes for page 1. Setting up the working environment
Last modified by puchades on 2025/02/13 10:43
Summary
-
Page properties (1 modified, 0 added, 0 removed)
-
Attachments (0 modified, 0 added, 1 removed)
Details
- Page properties
-
- Content
-
... ... @@ -3,7 +3,7 @@ 3 3 1. [[Register>>url:https://ebrains.eu/register/]] for an EBRAINS account, login, and set up a [[private collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/]]. 4 4 1. Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket. 5 5 1. Give users Admin, Editor or Viewer rights by clicking** Team** in the navigation panel. 6 -1. Install WebAlign, WebWarp,LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)6 +1. Install WebAlign, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below) 7 7 8 8 == How to install Collaboratory Apps == 9 9 ... ... @@ -229,25 +229,3 @@ 229 229 === Opening an EBRAINS dataset === 230 230 231 231 If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp. 232 - 233 - 234 -== **How to use LocaliZoom** == 235 - 236 -LocaliZoom is a web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases. LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space. 237 - 238 -Online Manual: [[https:~~/~~/localizoom.readthedocs.io/en/latest/>>https://localizoom.readthedocs.io/en/latest/]] 239 - 240 -The view can be magnified using the 4-arrow "X" symbol in the top-right corner. 241 - 242 -=== Opening a sample dataset === 243 - 244 - A demo dataset is loaded using the file: demo_mouse_data_lz 245 - 246 - 247 - 248 - 249 - 250 -== **How to use MeshView** == 251 - 252 - 253 -
- image1.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.puchades - Size
-
... ... @@ -1,1 +1,0 @@ 1 -1.0 MB - Content