Last modified by puchades on 2025/02/13 10:43
From version 39.1
edited by puchades
on 2023/06/22 09:40
Change comment: Uploaded new attachment "image1.png", version {1}
To version 39.2
edited by puchades
on 2023/06/22 09:44
Change comment: There is no comment for this version

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222 222  
223 223  === Opening a private dataset ===
224 224  
225 +(% class="wikigeneratedid" %)
226 +All the .waln files located in the Bucket are displayed on the WebWarp main page. Your progress in WebWarp is saved as a .wwrp file.
227 +
228 +=== Opening an EBRAINS dataset ===
229 +
230 +If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
231 +
232 +
233 +=== Non-linear registration ===
234 +
225 225  1. Navigate to the WebWarp app in the left-hand panel: all the .waln files located in the Bucket are displayed on the WebWarp main page.
226 226  1. Select the waln file corresponding to your result from the WebAlign image registration.
227 227  1. Wait for the images to load: this may take some time.
228 228  
229 -=== Opening an EBRAINS dataset ===
239 +[[[[image:image1.png||alt="_images/image1.png"]]>>url:https://webwarp.readthedocs.io/en/latest/_images/image1.png]]
230 230  
231 -If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
241 +Your registered images are visible in the main window. The atlas regions with transparency sliders can be toggled using the “Atlas opacity” button. The color of the atlas outline can be modified by clicking on the colored rectangle.
232 232  
243 + 4. When going to “Settings”, the button for selecting the marker color will appear as well as “show triangles” which correspond to areas affected by the same  transformation.
233 233  
245 + 5. Place a marker on an area you want to stretch using the space bar. Nonlinear distortions are applied by dragging a marker using the mouse.
246 +
247 + 6. Press Delete or Backspace to remove a marker under the mouse cursor.
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234 234  == **How to use LocaliZoom** ==
235 235  
236 236  LocaliZoom is a web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases. LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space.