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3	3	1. [[Register>>url:https://ebrains.eu/register/]] for an EBRAINS account, login, and set up a [[private collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/]].
4	4	1. Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket.
5	5	1. Give users Admin, Editor or Viewer rights by clicking** Team** in the navigation panel.
6		-1. Install WebAlign, WebWarp, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)
	6	+1. Install WebAlign, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)
7	7
8	8	== How to install Collaboratory Apps ==
9	9
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222	222
223	223	=== Opening a private dataset ===
224	224
225		-(% class="wikigeneratedid" %)
226		-All the .waln files located in the Bucket are displayed on the WebWarp main page. Your progress in WebWarp is saved as a .wwrp file.
227		-
228		-=== Opening an EBRAINS dataset ===
229		-
230		-If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
231		-
232		-
233		-=== Non-linear registration ===
234		-
235	235	1. Navigate to the WebWarp app in the left-hand panel: all the .waln files located in the Bucket are displayed on the WebWarp main page.
236	236	1. Select the waln file corresponding to your result from the WebAlign image registration.
237	237	1. Wait for the images to load: this may take some time.
238	238
239		-[[[[image:image1.png||alt="_images/image1.png"]]>>url:https://webwarp.readthedocs.io/en/latest/_images/image1.png]]
	229	+=== Opening an EBRAINS dataset ===
240	240
241		-Your registered images are visible in the main window. The atlas regions with transparency sliders can be toggled using the “Atlas opacity” button. The color of the atlas outline can be modified by clicking on the colored rectangle.
	231	+If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
242	242
243		- 4. When going to “Settings”, the button for selecting the marker color will appear as well as “show triangles” which correspond to areas affected by the same  transformation.
244	244
245		- 5. Place a marker on an area you want to stretch using the space bar. Nonlinear distortions are applied by dragging a marker using the mouse.
	234	+== **How to use LocaliZoom** ==
246	246
247		- 6. Press Delete or Backspace to remove a marker under the mouse cursor.
248	248
249		-
250		-
251	251
252	252
253	253	== **How to use LocaliZoom** ==
254	254
255		-LocaliZoom is a web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases. LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space.
256	256
257		-Online Manual: [[https:~~/~~/localizoom.readthedocs.io/en/latest/>>https://localizoom.readthedocs.io/en/latest/]]
258		-
259		-The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
260		-
261		-=== Opening a sample dataset ===
262		-
263		- A demo dataset is loaded using the file: demo_mouse_data_lz
264		-
265		-
266		-
267	267
268		-
269		-== **How to use MeshView** ==
270		-
271		-
272		-

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