Last modified by puchades on 2025/02/13 10:43
From version 41.1
edited by puchades
on 2023/06/22 09:46
Change comment: There is no comment for this version
To version 39.1
edited by puchades
on 2023/06/22 09:40
Change comment: Uploaded new attachment "image1.png", version {1}

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222 222  
223 223  === Opening a private dataset ===
224 224  
225 -(% class="wikigeneratedid" %)
226 -All the .waln files located in the Bucket are displayed on the WebWarp main page. Your progress in WebWarp is saved as a .wwrp file.
227 -
228 -=== Opening an EBRAINS dataset ===
229 -
230 -If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
231 -
232 -=== Non-linear registration ===
233 -
234 234  1. Navigate to the WebWarp app in the left-hand panel: all the .waln files located in the Bucket are displayed on the WebWarp main page.
235 235  1. Select the waln file corresponding to your result from the WebAlign image registration.
236 236  1. Wait for the images to load: this may take some time.
237 237  
238 -[[[[image:image1.png||alt="_images/image1.png"]]>>url:https://webwarp.readthedocs.io/en/latest/_images/image1.png]]
229 +=== Opening an EBRAINS dataset ===
239 239  
240 -Your registered images are visible in the main window. The atlas regions with transparency sliders can be toggled using the “Atlas opacity” button. The color of the atlas outline can be modified by clicking on the colored rectangle.
231 +If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
241 241  
242 - 4. When going to “Settings”, the button for selecting the marker color will appear as well as “show triangles” which correspond to areas affected by the same    transformation.
243 243  
244 - 5. Place a marker on an area you want to stretch using the space bar. Nonlinear distortions are applied by dragging a marker using the mouse.
245 -
246 - 6. Press Delete or Backspace to remove a marker under the mouse cursor.
247 -
248 - 7. Save your results pression the “save” button. “Save as” will allow you to save the adjustments as a new file with a different name.
249 -
250 - 8. When the registration is finished, you can export your descriptor files ( .seg files used for analysis in the QUINT workflow) by pressing “export overlays”. All results are zipped and stored in the bucket. The result file name will be the same as the one chosen to create the registration, e.g. “my-registration.zip”.
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252 -
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254 -
255 255  == **How to use LocaliZoom** ==
256 256  
257 257  LocaliZoom is a web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases. LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space.