Last modified by puchades on 2025/02/13 10:43
From version 41.1
edited by puchades
on 2023/06/22 09:46
Change comment: There is no comment for this version
To version 39.2
edited by puchades
on 2023/06/22 09:44
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -229,6 +229,7 @@
229 229  
230 230  If you would like to work with an EBRAINS dataset, open the LocaliZoom link from the KG dataset card ( [[https:~~/~~/search.kg.ebrains.eu>>url:https://search.kg.ebrains.eu]]) and paste it in the "Import LocaliZoom link" tab in WebAlign. Save this series as a .waln file you then can open in WebWarp.
231 231  
232 +
232 232  === Non-linear registration ===
233 233  
234 234  1. Navigate to the WebWarp app in the left-hand panel: all the .waln files located in the Bucket are displayed on the WebWarp main page.
... ... @@ -239,17 +239,14 @@
239 239  
240 240  Your registered images are visible in the main window. The atlas regions with transparency sliders can be toggled using the “Atlas opacity” button. The color of the atlas outline can be modified by clicking on the colored rectangle.
241 241  
242 - 4. When going to “Settings”, the button for selecting the marker color will appear as well as “show triangles” which correspond to areas affected by the same    transformation.
243 + 4. When going to “Settings”, the button for selecting the marker color will appear as well as “show triangles” which correspond to areas affected by the same  transformation.
243 243  
244 244   5. Place a marker on an area you want to stretch using the space bar. Nonlinear distortions are applied by dragging a marker using the mouse.
245 245  
246 246   6. Press Delete or Backspace to remove a marker under the mouse cursor.
247 247  
248 - 7. Save your results pression the “save” button. “Save as” will allow you to save the adjustments as a new file with a different name.
249 249  
250 - 8. When the registration is finished, you can export your descriptor files ( .seg files used for analysis in the QUINT workflow) by pressing “export overlays”. All results are zipped and stored in the bucket. The result file name will be the same as the one chosen to create the registration, e.g. “my-registration.zip”.
251 251  
252 -
253 253  
254 254  
255 255  == **How to use LocaliZoom** ==