Last modified by puchades on 2025/02/13 10:43
From version 43.1
edited by puchades
on 2023/06/22 11:23
Change comment: There is no comment for this version
To version 53.1
edited by puchades
on 2023/07/05 09:25
Change comment: There is no comment for this version

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2 2  
3 3  1. [[Register>>url:https://ebrains.eu/register/]] for an EBRAINS account, login, and set up a [[private collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/]].
4 4  1. Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket.
5 +1. Remember to set your data proxy bucket to "public". Your collab can still be private.
5 5  1. Give users Admin, Editor or Viewer rights by clicking** Team** in the navigation panel.
6 -1. Install WebAlign, WebWarp, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)
7 +1. Install WebAlign, WebWarp, LocaliZoom, and Meshview from the EBRAINS Collaboratory App Store (see instructions below)[[image:public_data_proxy_bucket.png]]
7 7  
8 8  == How to install Collaboratory Apps ==
9 9  
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29 29  
30 30  === Use the "QUINT image creator" app ===
31 31  
33 +(% style="color:#e67e22" %)NB! we are still working on this app for the moment. For the enabling viewer links,  make your bucket "public". The collab can still be "private".
34 +
32 32  **2a. Select images to ingest**
33 33  
34 34  Click on your images in order to select them and press the "create brain from selection" button. Choose a name for your serie.
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284 284  
285 285  == **How to use MeshView** ==
286 286  
290 +MeshView is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, and point clouds extracted from datasets.
287 287  
292 +Online manual: [[https:~~/~~/meshview-for-brain-atlases.readthedocs.io/en/latest>>https://meshview-for-brain-atlases.readthedocs.io/en/latest]]
293 +
294 +The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
295 +
296 +=== Open point cloud files ===
297 +
298 +MeshView can open annotations from LocaliZoom (.lz files). Possibility of a global control of all structures, using the slider will render the meshes transparent or disappear.
299 +
300 +The individual control allow each structure to be made transparent or disappear. The color for each structure can be changed when clicking on the colored square.
301 +
302 +Navigation in the hierarchy is possible by clicking on the region names (grey boxes), this will collapse parts of the region tree.
303 +
304 +=== Export images ===
305 +
306 +The "screenshot" button allows to capture the main window view as a png file.
307 +
308 +[[image:image19.png]]
309 +
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