Last modified by puchades on 2025/02/13 10:43

From version 6.1
edited by puchades
on 2023/04/12 11:41
Change comment: There is no comment for this version
To version 3.1
edited by puchades
on 2023/04/12 11:39
Change comment: There is no comment for this version

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1 -== To set up your working environment: ==
1 +== To set up the working environment: ==
2 2  
3 3  1. [[Register>>url:https://ebrains.eu/register/]] for an EBRAINS account, login, and set up a [[private collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/]].
4 4  1. Initialise the Bucket by clicking on Bucket in the navigation panel -> Create Bucket.
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69 69  
70 70  When "successful", your chunks have been created.
71 71  
72 -== **How to use WebAlign** ==
72 +== What is WebAlign? ==
73 73  
74 -WebAlign is an online tool for spatial registration of histological section images from rodent brains to reference 3D atlases.  Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system. The output of WebAlign can be used for analysis in the online QUINT workflow.
74 +WebAlign is an online tool for spatial registration of histological section images from rodent brains to reference 3D atlases.  Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system. The output of WebAlign is used for analysis in the online QUINT workflow.
75 75  
76 +== **How to use WebAlign** ==
77 +
76 76  The view can be magnified using the 4-arrow "X" symbol in the top-right corner.
77 77  
78 78  === Opening a sample dataset ===
79 79  
80 -Demo dataset is loaded using the file: **demo_mouse_data_start**
82 +Demo dataset is loaded using the file:**demo_mouse_data_start**
81 81  
82 82  You can see the result of a finished anchoring by choosing the file: **demo_mouse_data**
83 83