Changes for page Mesocircuit
Last modified by senk on 2022/05/23 22:36
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... ... @@ -2,35 +2,55 @@ 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= A mesoscopic layered cortical network model = 5 += **The cortical mesocircuit model** = 6 + 7 +A layered network model covering 4x4 mm² of cortical surface area 6 6 ))) 7 7 ))) 8 8 9 -(% class="row" %) 10 -((( 11 11 (% class="col-xs-12 col-sm-8" %) 12 12 ((( 13 -(% class=" wikigeneratedid" %)14 - ==13 +(% class="row" %) 14 + 15 15 16 -= What can I find here? = 16 +(% class="row" id="HOverview" %) 17 += Overview = 17 17 18 -* Notice how the table of contents on the right 19 -* is automatically updated 20 -* to hold this page's headers 19 +The cortical mesocircuit model is a lateral extension of the microcircuit model published by [[Potjans & Diesmann (2014)>>https://doi.org/10.1093/cercor/bhs358]]. 21 21 22 -= Who has access? = 23 - 24 -Describe the audience of this collab. 21 +(% style="text-align:center" %) 22 +[[image:mesocircuit_sketch.png||height="333" width="500"]] 25 25 ))) 26 26 27 - 28 28 (% class="col-xs-12 col-sm-4" %) 29 29 ((( 30 30 {{box title="**Contents**"}} 31 31 {{toc/}} 32 32 {{/box}} 30 +))) 33 33 34 - 32 +(% class="col-xs-12 col-sm-12" %) 33 +((( 34 +Like the microcircuit, the mesocircuit represents four layers of cortex, L2/3, L4, L5, and L6, each consisting of a population of excitatory neurons and a population of inhibitory neurons. External input can be provided by a thalamic population TC. 35 + 36 +The mesocircuit is a spatially structured network model covering 4x4 mm² of cortical surface area which is similar in size to multi-electrode arrays in use today. 37 + 38 +The neurons of each population are assigned random positions in two-dimensional layers and they are connected with distance-dependent connection probabilities and conduction delays. 39 + 40 +The densities of neurons and local synapses in the network are assumed to be realistic, amounting to ~~1.2 million neurons and ~~5.5 billion synapses. 41 + 42 +The model accounts for both spiking activity simulated with [[NEST>>https://www.nest-simulator.org]] and local-field potentials relying on [[LFPy>>https://LFPy.rtfd.io]]. 43 + 44 +(% class="row" id="HStatusofmodeldevelopment" %) 45 += Status of model development = 46 + 47 +The mesocircuit is still under development and the neither the code nor a peer-reviewed manuscript have been published, yet. 48 + 49 +To date, only a [[preprint>>https://arxiv.org/abs/1805.10235]] with detailed model documentation and preliminary results is available on arXiv.org. 50 + 51 +The Drive of this Collab provides access to a [[recent version of the model implementation>>https://wiki.ebrains.eu/bin/view/Collabs/mesocircuit/Drive]]. 52 + 53 +The development of the mesocircuit model belongs to task "SGA2 T4.2.1 - Spiking mesoscale cortical models with spatial organization" and constitutes the [[component C2418>>https://plus.humanbrainproject.eu/components/2418]]. 54 + 55 +The main contributors are Johanna Senk, Espen Hagen, Sacha J. van Albada and Markus Diesmann. 35 35 ))) 36 -)))