Last modified by michaels on 2022/05/23 22:25
From version 12.1
edited by michaels
on 2021/04/16 21:42
Change comment: There is no comment for this version
To version 7.1
edited by michaels
on 2020/12/08 12:06
Change comment: There is no comment for this version

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format =
5 += An example script that creates openMINDS metadata for TVB data uploads =
6 6  
7 +in JSON-LD format
7 7  
8 8  = What can I find here? =
9 9  
10 10  * a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
11 -* [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]]
12 +* [[Direct link to notebook>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20groups/openMINDS%20metadata/create_openMINDS_metadata.ipynb]]
12 12  * openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
13 13  * it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
14 14  * For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
15 -* Note: openMINDS was updated and this notebook may no longer generate valid openMINDS metadata. The provided notebook was successfully used to create valid metadata sets in openMINDS version 1.0.
16 +* Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
16 16  
17 17  = Further information =
18 18  
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22 22  
23 23  * Brain network simulation:
24 24  [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
25 -* Connectome construction:
26 +*
26 26  
28 +Connectome construction:
27 27  [[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
28 28  
29 -* Multiscale co-simulation with spiking networks:
31 +*
30 30  
33 +Multiscale co-simulation with spiking networks: 
31 31  [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
32 32  [[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
33 33  
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