Wiki source code of openMINDS metadata for TVB-ready data
Last modified by michaels on 2022/05/23 22:25
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| 5 | = Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format = | ||
| 6 | |||
| 7 | |||
| 8 | = What can I find here? = | ||
| 9 | |||
| 10 | * a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph | ||
| 11 | * [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]] | ||
| 12 | * openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph | ||
| 13 | * it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data. | ||
| 14 | * For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]] | ||
| 15 | * Note: openMINDS was updated and this notebook may no longer generate valid openMINDS metadata. The provided notebook was successfully used to create valid metadata sets in openMINDS version 1.0. | ||
| 16 | |||
| 17 | = Further information = | ||
| 18 | |||
| 19 | * openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph | ||
| 20 | * ((( | ||
| 21 | This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing: | ||
| 22 | |||
| 23 | * Brain network simulation: | ||
| 24 | [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]] | ||
| 25 | * Connectome construction: | ||
| 26 | |||
| 27 | [[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]] | ||
| 28 | |||
| 29 | * Multiscale co-simulation with spiking networks: | ||
| 30 | |||
| 31 | [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]] | ||
| 32 | [[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]] | ||
| 33 | |||
| 34 | * High-performance simulation: | ||
| 35 | [[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]] | ||
| 36 | |||
| 37 | * Bayesian Virtual Epileptic Patient: | ||
| 38 | [[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]] | ||
| 39 | * TVB Mouse Brains: | ||
| 40 | [[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]] | ||
| 41 | [[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]] | ||
| 42 | ))) | ||
| 43 | |||
| 44 | == Authors == | ||
| 45 | |||
| 46 | * Roopa Pai | ||
| 47 | * Michael Schirner | ||
| 48 | * Lyuba Zehl | ||
| 49 | * Petra Ritter | ||
| 50 | |||
| 51 | == Contact == | ||
| 52 | |||
| 53 | Petra Ritter <petra.ritter@charite.de> | ||
| 54 | ))) | ||
| 55 | ))) | ||
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