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Last modified by michaels on 2022/05/23 22:25
From version 13.1
edited by michaels
on 2022/03/22 18:07
Change comment: Migrated property [owner] from class [Collaboratory.Apps.Collab.Code.CollabClass]
To version 6.1
edited by michaels
on 2020/12/08 12:05
Change comment: There is no comment for this version

Summary

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format =
5 += My Collab's Extended Title =
6 6  
7 +My collab's subtitle
8 +)))
9 +)))
7 7  
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12 +(((
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14 +(((
8 8  = What can I find here? =
9 9  
10 -* a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
11 -* [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]]
12 -* openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
13 -* it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
14 -* For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
15 -* Note: openMINDS was updated and this notebook may no longer generate valid openMINDS metadata. The provided notebook was successfully used to create valid metadata sets in openMINDS version 1.0.
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
16 16  
17 -= Further information =
21 += Who has access? =
18 18  
19 -* openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
20 -* (((
21 -This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
22 -
23 -* Brain network simulation:
24 -[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
25 -* Connectome construction:
26 -
27 -[[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
28 -
29 -* Multiscale co-simulation with spiking networks:
30 -
31 -[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
32 -[[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
33 -
34 -* High-performance simulation: 
35 -[[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
36 -
37 -* Bayesian Virtual Epileptic Patient:
38 -[[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
39 -* TVB Mouse Brains:
40 -[[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
41 -[[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
23 +Describe the audience of this collab.
42 42  )))
43 43  
44 -== Authors ==
45 45  
46 -* Roopa Pai
47 -* Michael Schirner
48 -* Lyuba Zehl
49 -* Petra Ritter
50 -
51 -== Contact ==
52 -
53 -Petra Ritter <petra.ritter@charite.de>
54 -)))
55 -)))
56 -
57 -(% class="row" %)
58 -(((
59 59  (% class="col-xs-12 col-sm-4" %)
60 60  (((
29 +{{box title="**Contents**"}}
30 +{{toc/}}
31 +{{/box}}
32 +
61 61  
62 62  )))
63 63  )))
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