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2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-= My Collab's Extended Title =
	5	+= An example script that creates openMINDS metadata for TVB data uploads =
6	6
7		-My collab's subtitle
8		-)))
9		-)))
	7	+in JSON-LD format
10	10
11		-(% class="row" %)
12		-(((
13		-(% class="col-xs-12 col-sm-8" %)
14		-(((
15	15	= What can I find here? =
16	16
17		-* Notice how the table of contents on the right
18		-* is automatically updated
19		-* to hold this page's headers
	11	+* a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
	12	+* [[Direct link to notebook>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20groups/openMINDS%20metadata/create_openMINDS_metadata.ipynb]]
	13	+* openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
	14	+* it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
	15	+* For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
	16	+* Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
20	20
21		-= Who has access? =
	18	+= Further information =
22	22
23		-Describe the audience of this collab.
	20	+* openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
	21	+* (((
	22	+This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
	23	+
	24	+* Brain network simulation:
	25	+[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
	26	+*
	27	+
	28	+Connectome construction:
	29	+[[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
	30	+
	31	+*
	32	+
	33	+Multiscale co-simulation with spiking networks:
	34	+[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
	35	+[[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
	36	+
	37	+* High-performance simulation:
	38	+[[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
	39	+
	40	+* Bayesian Virtual Epileptic Patient:
	41	+[[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
	42	+* TVB Mouse Brains:
	43	+[[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
	44	+[[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
24	24	)))
25	25
	47	+== Authors ==
26	26
	49	+* Roopa Pai
	50	+* Michael Schirner
	51	+* Lyuba Zehl
	52	+* Petra Ritter
	53	+
	54	+== Contact ==
	55	+
	56	+Petra Ritter <petra.ritter@charite.de>
	57	+)))
	58	+)))
	59	+
	60	+(% class="row" %)
	61	+(((
27	27	(% class="col-xs-12 col-sm-4" %)
28	28	(((
29		-{{box title="**Contents**"}}
30		-{{toc/}}
31		-{{/box}}
32		-
33	33
34	34	)))
35	35	)))