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2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-= My Collab's Extended Title =
	5	+= Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format =
6	6
7		-My collab's subtitle
8		-)))
9		-)))
10	10
11		-(% class="row" %)
12		-(((
13		-(% class="col-xs-12 col-sm-8" %)
14		-(((
15	15	= What can I find here? =
16	16
17		-* Notice how the table of contents on the right
18		-* is automatically updated
19		-* to hold this page's headers
	10	+* a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
	11	+* [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]]
	12	+* openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
	13	+* it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
	14	+* For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
	15	+* Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
20	20
21		-= Who has access? =
	17	+= Further information =
22	22
23		-Describe the audience of this collab.
	19	+* openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
	20	+* (((
	21	+This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
	22	+
	23	+* Brain network simulation:
	24	+[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
	25	+*
	26	+
	27	+Connectome construction:
	28	+[[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
	29	+
	30	+*
	31	+
	32	+Multiscale co-simulation with spiking networks:
	33	+[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
	34	+[[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
	35	+
	36	+* High-performance simulation:
	37	+[[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
	38	+
	39	+* Bayesian Virtual Epileptic Patient:
	40	+[[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
	41	+* TVB Mouse Brains:
	42	+[[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
	43	+[[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
24	24	)))
25	25
	46	+== Authors ==
26	26
	48	+* Roopa Pai
	49	+* Michael Schirner
	50	+* Lyuba Zehl
	51	+* Petra Ritter
	52	+
	53	+== Contact ==
	54	+
	55	+Petra Ritter <petra.ritter@charite.de>
	56	+)))
	57	+)))
	58	+
	59	+(% class="row" %)
	60	+(((
27	27	(% class="col-xs-12 col-sm-4" %)
28	28	(((
29		-{{box title="**Contents**"}}
30		-{{toc/}}
31		-{{/box}}
32		-
33	33
34	34	)))
35	35	)))