Last modified by michaels on 2022/05/23 22:25
From version 7.1
edited by michaels
on 2020/12/08 12:06
Change comment: There is no comment for this version
To version 2.1
edited by michaels
on 2020/12/08 12:05
Change comment: There is no comment for this version

Summary

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= An example script that creates openMINDS metadata for TVB data uploads =
5 += My Collab's Extended Title =
6 6  
7 -in JSON-LD format
7 +My collab's subtitle
8 +)))
9 +)))
8 8  
11 +(% class="row" %)
12 +(((
13 +(% class="col-xs-12 col-sm-8" %)
14 +(((
9 9  = What can I find here? =
10 10  
11 -* a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
12 -* [[Direct link to notebook>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20groups/openMINDS%20metadata/create_openMINDS_metadata.ipynb]]
13 -* openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
14 -* it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
15 -* For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
16 -* Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
17 17  
18 -= Further information =
21 += Who has access? =
19 19  
20 -* openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
21 -* (((
22 -This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
23 -
24 -* Brain network simulation:
25 -[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
26 -*
27 -
28 -Connectome construction:
29 -[[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
30 -
31 -*
32 -
33 -Multiscale co-simulation with spiking networks: 
34 -[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
35 -[[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
36 -
37 -* High-performance simulation: 
38 -[[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
39 -
40 -* Bayesian Virtual Epileptic Patient:
41 -[[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
42 -* TVB Mouse Brains:
43 -[[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
44 -[[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
23 +Describe the audience of this collab.
45 45  )))
46 46  
47 -== Authors ==
48 48  
49 -* Roopa Pai
50 -* Michael Schirner
51 -* Lyuba Zehl
52 -* Petra Ritter
53 -
54 -== Contact ==
55 -
56 -Petra Ritter <petra.ritter@charite.de>
57 -)))
58 -)))
59 -
60 -(% class="row" %)
61 -(((
62 62  (% class="col-xs-12 col-sm-4" %)
63 63  (((
29 +{{box title="**Contents**"}}
30 +{{toc/}}
31 +{{/box}}
32 +
64 64  
65 65  )))
66 66  )))
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