Last modified by michaels on 2022/05/23 22:25
From version 7.1
edited by michaels
on 2020/12/08 12:06
Change comment: There is no comment for this version
To version 9.1
edited by michaels
on 2020/12/08 12:12
Change comment: There is no comment for this version

Summary

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= An example script that creates openMINDS metadata for TVB data uploads =
5 += Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format =
6 6  
7 -in JSON-LD format
8 8  
9 9  = What can I find here? =
10 10  
11 11  * a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
12 -* [[Direct link to notebook>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20groups/openMINDS%20metadata/create_openMINDS_metadata.ipynb]]
11 +* [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]]
13 13  * openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
14 14  * it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
15 15  * For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
16 -* Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
15 +* Note: openMINDS was updated and this notebook may no longer generate valid openMINDS metadata. The provided notebook was successfully used to create valid metadata sets in openMINDS version 1.0.
17 17  
18 18  = Further information =
19 19  
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23 23  
24 24  * Brain network simulation:
25 25  [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
26 -*
25 +*
27 27  
28 28  Connectome construction:
29 29  [[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
30 30  
31 -*
30 +*
32 32  
33 33  Multiscale co-simulation with spiking networks: 
34 34  [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]