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Last modified by michaels on 2022/05/23 22:25
From version 8.1
edited by michaels
on 2020/12/08 12:11
Change comment: There is no comment for this version
To version 1.1
edited by michaels
on 2020/12/08 12:05
Change comment: Collab created through API

Summary

Details

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Example script for creating openMINDS metadata for TVB data uploads in JSON-LD format =
5 += My Collab's Extended Title =
6 6  
7 +My collab's subtitle
8 +)))
9 +)))
7 7  
11 +(% class="row" %)
12 +(((
13 +(% class="col-xs-12 col-sm-8" %)
14 +(((
8 8  = What can I find here? =
9 9  
10 -* a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
11 -* [[Direct link to notebook>>https://drive.ebrains.eu/f/6ac926e0e2ba4f22ae12/]]
12 -* openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
13 -* it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
14 -* For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
15 -* Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
16 16  
17 -= Further information =
21 += Who has access? =
18 18  
19 -* openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
20 -* (((
21 -This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
22 -
23 -* Brain network simulation:
24 -[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
25 -*
26 -
27 -Connectome construction:
28 -[[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
29 -
30 -*
31 -
32 -Multiscale co-simulation with spiking networks: 
33 -[[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
34 -[[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
35 -
36 -* High-performance simulation: 
37 -[[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
38 -
39 -* Bayesian Virtual Epileptic Patient:
40 -[[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
41 -* TVB Mouse Brains:
42 -[[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
43 -[[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
23 +Describe the audience of this collab.
44 44  )))
45 45  
46 -== Authors ==
47 47  
48 -* Roopa Pai
49 -* Michael Schirner
50 -* Lyuba Zehl
51 -* Petra Ritter
52 -
53 -== Contact ==
54 -
55 -Petra Ritter <petra.ritter@charite.de>
56 -)))
57 -)))
58 -
59 -(% class="row" %)
60 -(((
61 61  (% class="col-xs-12 col-sm-4" %)
62 62  (((
29 +{{box title="**Contents**"}}
30 +{{toc/}}
31 +{{/box}}
32 +
63 63  
64 64  )))
65 65  )))
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