Version 7.1 by michaels on 2020/12/08 12:06
Show last authors
1 (% class="jumbotron" %)
2 (((
3 (% class="container" %)
4 (((
5 = An example script that creates openMINDS metadata for TVB data uploads =
6
7 in JSON-LD format
8
9 = What can I find here? =
10
11 * a Jupyter Python notebook with code and commentaries for creating openMINDS metadata version 1.0 in JSON-LD format for ingestion of TVB-ready data in KnowledgeGraph
12 * [[Direct link to notebook>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20groups/openMINDS%20metadata/create_openMINDS_metadata.ipynb]]
13 * openMINDS metadata can be directly ingested by EBRAINS' KnowledgeGraph
14 * it allows to annotate neuroscientific data (e.g. MRI) with metadata that specifies properties of the data in a structured manner and that allows better finding and reuse of the data.
15 * For more information, please visit the main openMINDS repository: [[https:~~/~~/github.com/HumanBrainProject/openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]]
16 * Note: openMINDS is under ongoing development. The provided notebook was successfully used to create valid metadata sets, however, this may change if the standard changes.
17
18 = Further information =
19
20 * openMINDS metadata is required for curation of a data set for publication in EBRAINS' KnowledgeGraph
21 * (((
22 This Collab is one of "The Virtual Brain at EBRAINS" cloud services for brain simulation and imaging data processing:
23
24 * Brain network simulation:
25 [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain>>path:/bin/view/Collabs/the-virtual-brain/]]
26 *
27
28 Connectome construction:
29 [[wiki.ebrains.eu/bin/view/Collabs/tvb-pipeline>>path:/bin/view/Collabs/tvb-pipeline/]]
30
31 *
32
33 Multiscale co-simulation with spiking networks: 
34 [[wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
35 [[wiki.ebrains.eu/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/>>path:/bin/view/Collabs/co-simulation-tvb-and-nest-high-computer/]]
36
37 * High-performance simulation: 
38 [[wiki.ebrains.eu/bin/view/Collabs/fast-tvb>>path:/bin/view/Collabs/]]
39
40 * Bayesian Virtual Epileptic Patient:
41 [[wiki.ebrains.eu/bin/view/Collabs/bayesian-virtual-epileptic-patient>>path:/bin/view/Collabs/bayesian-virtual-epileptic-patient/]]
42 * TVB Mouse Brains:
43 [[wiki.ebrains.eu/bin/view/Collabs/tvb-mouse-brains>>path:/bin/view/Collabs/tvb-mouse-brains/]]
44 [[wiki.ebrains.eu/bin/view/Collabs/mouse-stroke-brain-network-model>>path:/bin/view/Collabs/mouse-stroke-brain-network-model/]]
45 )))
46
47 == Authors ==
48
49 * Roopa Pai
50 * Michael Schirner
51 * Lyuba Zehl
52 * Petra Ritter
53
54 == Contact ==
55
56 Petra Ritter <petra.ritter@charite.de>
57 )))
58 )))
59
60 (% class="row" %)
61 (((
62 (% class="col-xs-12 col-sm-4" %)
63 (((
64
65 )))
66 )))