Wiki source code of openMINDS

Version 39.1 by lzehl on 2021/03/21 10:55
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lzehl 23.1 5 [[image:openMINDS_logo_github.png||alt="openMINDS logo" height="170px" style="margin-right:1em"]]
oschmid 15.1 6 The **o**pen **M**etadata **I**nitiative for **N**euroscience **D**ata **S**tructures:
7 Community-driven metadata models for neuroscience graph databases.
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15 = What can I find here? =
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lzehl 21.1 17 **+** general overview of openMINDS
18 **+** documentation for all openMINDS metadata models
19 **+** documentation for using openMINDS
20 **+** documentation for contributing to openMINDS
21 **+** tutorials
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23 = Who has access? =
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lzehl 20.1 26 This collab appeals to members of the neuroscience community that are interested in:
lzehl 21.1 27 (**1**) describing their research products, conform with openMINDS
lzehl 12.1 28 (**2**) contributing to openMINDS
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lzehl 11.1 30 = Who is openMINDS? =
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lzehl 29.1 33 openMINDS is powered by **HBP** ([[**H**uman **B**rain **P**roject>>https://www.humanbrainproject.eu/en/||rel="noopener noreferrer" target="_blank"]]) and **EBRAINS** ([[**E**uropean **B**rain **R**ese**A**rch **IN**fra**S**tructure>>https://ebrains.eu/||rel="noopener noreferrer" target="_blank"]]), but looking for external contributions throughout the neuroscience community.
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lzehl 27.1 36 We, the openMINDS development team, currently unite knowledge from the EBRAINS curation, the EBRAINS Knowledge Graph, the EBRAINS Atlas, and the INCF Knowledge Space teams. If you want to get in touch with us, please contact us via our support email: [[openminds@ebrains.eu>>mailto:openminds@ebrains.eu]]
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lzehl 31.1 39 Within EBRAINS, the openMINDS metadata models are adopted by the EBRAINS Knowledge Graph and Interactive Brain Atlas. In addition, openMINDS is currently in the process of being adopted by the [[Japan Brain/MINDS project>>https://brainminds.jp/en/||rel="noopener noreferrer" target="_blank"]].
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lzehl 34.2 46 » [[Documentation>>doc:.openMINDS core.WebHome]]
lzehl 36.1 47 » [[Metadata models & schemas>>doc:.openMINDS core.Metadata models & schemas.WebHome]]
48 » [[Application details>>doc:.openMINDS core.Application details.WebHome]]
49 » [[Technical details>>doc:.openMINDS core.Implementation details.WebHome]]
lzehl 34.2 50 » [[How to contribute>>doc:.openMINDS SANDS.WebHome]]
51 » [[Code of conduct>>doc:.openMINDS SANDS.Code Of Conduct.WebHome]]
lzehl 36.1 52 » [[How to report & ask questions>>doc:.openMINDS SANDS.Report & ask questions.WebHome]]
lzehl 34.2 53 » [[Tutorials>>doc:.Tutorials.WebHome]]
54 » Presentations
55 » Examples
56 » [[FAQs>>doc:.FAQs.WebHome]]
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64 [[Dataset>>||anchor="Dataset"]]
65 [[MetaDataModel>>||anchor="MetaDataModel"]]
66 [[Model>>||anchor="Model"]]
67 [[Software>>||anchor="Software"]]
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lzehl 10.1 74 {{box title="**List of GitHub projects**"}}
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lzehl 10.1 76 [[openMINDS (main)>>https://github.com/HumanBrainProject/openMINDS]]
77 [[openMINDS core>>https://github.com/HumanBrainProject/openMINDS_core]]
78 [[openMINDS SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
79 [[openMINDS controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
80 [[openMINDS instances>>https://github.com/HumanBrainProject/openMINDS_instances]]
81 [[openMINDS generator>>https://github.com/HumanBrainProject/openMINDS_generator]]
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88 {{id name="Dataset"/}}**Dataset**: Within openMINDS a "Dataset" describes experimental data originating from human, animal or simulation studies.
89 {{id name="MetaDataModel"/}}**MetaDataModel**: Within openMINDS a "MetaDataModel" describes specifications for structuring metadata and/or file repositories.
90 {{id name="Model"/}}**Model**: Within openMINDS a "Model" describes code and data defined around a computational model.
91 {{id name="Software"/}}**Software**: Within openMINDS a "Software" describes programs and other operating information used by a computer to handle data across different Datasets or Models.
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