Wiki source code of Metadata models & schemas

Version 14.1 by lzehl on 2021/02/22 16:12

version	line-number	content
2.1	1	(% class="box infomessage" %)
	2	(((
	3	(% style="text-align: justify;" %)
4.1	4	The openMINDS metadata models all consist of modular connectable metadata schemas. Each schema can be referenced by it's type and defines properties (including their expected value) for a set of related metadata.
2.1	5
4.1	6	(% style="text-align: justify;" %)
5.1	7	Please find the HTML description for all schemas of each openMINDS metadata model in the corresponding sub-pages. A short overview for each openMINDS metadata model can be found below.
4.1	8
	9	(% style="text-align: justify;" %)
2.1	10	Note that all metadata models are licensed under the MIT license.
	11	)))
	12
3.1	13	=== openMINDS core ===
2.1	14
12.1	15	(% style="text-align: justify;" %)
10.1	16	The openMINDS core metadata model contains schemas that can be used to describe the general origin, resource location, and content of research products in the field of neuroscience. Currently ( Feb 2021) this metadata model comprises 37 usable schemas, grouped into five classes:
2.1	17
7.1	18	{{container layoutStyle="columns"}}
	19	(((
	20	(% class="small" %)
8.1	21	ACTORS
7.1	22	Affiliation
	23	ContactInformation
	24	Contribution
	25	Organization
	26	Person
	27	(% class="small" %)
8.1	28	DATA
7.1	29	ContentType
	30	Copyright
	31	FileBundle
	32	FileInstance
	33	FileRepository
	34	Hash
	35	License
	36	)))
	37	(((
	38	(% class="small" %)
8.1	39	MISCELLANEOUS
7.1	40	DigitalIdentifier
	41	DigitalIdentifierSchema
	42	Funding
	43	QuantitativeValue
	44	QuantitativeValueRange
	45	(% class="small" %)
8.1	46	PRODUCTS
7.1	47	Dataset
	48	DatasetVersion
	49	MetaDataModel
	50	MetaDataModelVersion
	51	Model
	52	ModelVersion
	53	Project
	54	Software
	55	SoftwareVersion
	56	)))
	57	(((
	58	(% class="small" %)
8.1	59	RESEARCH
7.1	60	ParameterSetting
	61	Protocol
	62	ProtocolExecution
	63	Subject
	64	SubjectGroup
	65	SubjectGroupState
	66	SubjectState
	67	TissueSample
	68	TissueSampleCollection
	69	TissueSampleCollectionState
	70	TissueSampleState
	71	)))
	72	{{/container}}
6.1	73
14.1	74	(% class="wikigeneratedid" style="text-align: justify;" %)
	75	For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
	76
	77	(% class="wikigeneratedid" %)
	78	[[https:~~/~~/github.com/HumanBrainProject/openMINDS_core>>https://github.com/HumanBrainProject/openMINDS_core]]
	79
3.1	80	=== openMINDS SANDS ===
2.1	81
12.1	82	(% style="text-align: justify;" %)
	83	The openMINDS SANDS (Spatial Anchoring for Neuroscience Data Structures) metadata model contains schemas that can be used to capture the anatomical location of neuroscience data as well as to identify and highlight commonly used reference brain atlases and coordinate spaces. Currently (Feb 2021) this metadata model comprises 12 metadata schemas:
2.1	84
11.1	85	{{container layoutStyle="columns"}}
	86	(((
	87	(% class="small" %)
	88	AnatomicalEntity
	89	AnatomicalEntityRelation
	90	Annotation
	91	AtlasTerminology
	92	)))
	93	(((
	94	(% class="small" %)
	95	BrainAtlas
	96	BrainAtlasVersion
	97	CoordinatePoint
	98	CoordinateSpace
	99	)))
	100	(((
	101	(% class="small" %)
	102	Electrode
	103	ElectrodeArray
	104	ElectrodeContact
	105	Image
	106	)))
	107	{{/container}}
	108
14.1	109	(% class="wikigeneratedid" style="text-align: justify;" %)
	110	For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
	111
	112	(% class="wikigeneratedid" %)
	113	[[https:~~/~~/github.com/HumanBrainProject/openMINDS_SANDS>>https://github.com/HumanBrainProject/openMINDS_SANDS]]
	114
12.1	115	=== openMINDS controlledTerms - schemas ===
2.1	116
12.1	117	(% style="text-align: justify;" %)
13.1	118	The openMINDS controlledTerms metadata model contains schemas that ensure consistent registration of well-defined terms, including linkages to existing ontological terms where applicable. Currently (Feb 2021) this metadata model comprises 38 nearly identical schemas:
2.1	119
12.1	120	{{container layoutStyle="columns"}}
	121	(((
	122	(% class="small" %)
	123	AgeCategory
	124	AnatomicalAxesOrientation
	125	BehavioralTask
	126	BiologicalSex
	127	CellType
	128	ContributionType
	129	CriteriaQualityType
	130	DatasetType
	131	Disease
	132	DiseaseModel
	133	EthicsAssessment
	134	FileBundleGrouping
13.1	135	FileUsageRole
12.1	136	)))
	137	(((
	138	(% class="small" %)
	139	Genotype
	140	Language
	141	Laterality
	142	MetaDataModelType
	143	Modality
	144	ModelAbstractionLevel
	145	ModelScope
	146	OperatingDevice
	147	OperatingSystem
	148	Organ
	149	Phenotype
13.1	150	PreparationType
	151	ProductAccessibility
12.1	152	)))
	153	(((
	154	(% class="small" %)
	155	ProgrammingLanguage
	156	QualitativeOverlap
	157	SoftwareApplicationCategory
	158	SoftwareFeature
	159	Species
	160	Strain
	161	Technique
13.1	162	TermSuggestion
12.1	163	Terminology
	164	TissueSampleType
	165	TypeOfUncertainty
	166	UnitOfMeasurement
	167	)))
	168	{{/container}}
	169
13.1	170	(% style="text-align: justify;" %)
	171	Except for TermSuggestion, the openMINDS controlledTerms metadata schemas differ only in their type which defines the name of the terminology the correspondingly controlled terms are registered to (cf. openMINDS controlledTerms - terminologies). Compared to these schemas, the TermSuggestion has one additional property ("terminology") where users can state to which terminology the new suggested (not yet controlled) term belongs to.
	172
14.1	173	(% class="wikigeneratedid" style="text-align: justify;" %)
	174	For details, contributing or reviewing examples please checkout as well the corresponding GitHub repository:
	175
	176	(% class="wikigeneratedid" %)
	177	[[https:~~/~~/github.com/HumanBrainProject/openMINDS_controlledTerms>>https://github.com/HumanBrainProject/openMINDS_controlledTerms]]
	178
2.1	179	=== openMINDS instances ===
	180
	181	xxx

Wiki source code of Metadata models & schemas

openMINDS