Last modified by michaels on 2022/05/23 22:24
From version 18.1
edited by michaels
on 2020/05/06 15:07
Change comment: There is no comment for this version
To version 4.1
edited by michaels
on 2020/05/04 16:02
Change comment: There is no comment for this version

Summary

Details

Page properties
Tags
... ... @@ -1,1 +1,0 @@
1 -tool|CHARITE|brain network model|brain simulation|tvb|high performance|parallel|hpc|supercomputer|connectome|functional connectivity|the virtual brain
Content
... ... @@ -2,13 +2,9 @@
2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= TVB C ~-~- High-speed parallel brain network models =
5 += My Collab's Extended Title =
6 6  
7 -A fast implementation of The Virtual Brain brain network simulator
8 -
9 -[[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/f5e40b3b-91cb-4671-9178-4d2673ad8ac4]]
10 -
11 -[[image:4144.jpeg]]
7 +My collab's subtitle
12 12  )))
13 13  )))
14 14  
... ... @@ -16,61 +16,18 @@
16 16  (((
17 17  (% class="col-xs-12 col-sm-8" %)
18 18  (((
19 -== What can I find here? ==
15 += What can I find here? =
20 20  
21 -* an IPython notebook that describes how to
22 -** pull the TVB-C container into one of the associated supercomputers using PyUnicore
23 -** upload model data to the supercomputer
24 -** set up and run simulations
25 -** download simulation results
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
26 26  
27 -== How do I use it? ==
21 += Who has access? =
28 28  
29 -* the simulation code is implemented as a Docker container
30 -* the container is executed on supercomputers and operated via IPython notebooks
31 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
32 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
33 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
34 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
35 -
36 -== Metadata ==
37 -
38 -|=Partners|(((
39 -* Charité Universitätsmedizin Berlin [[CHARITE>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
23 +Describe the audience of this collab.
40 40  )))
41 -|=Maintainers|(((
42 -* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
43 -* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
44 -* [[Paul Triebkorn>>path:mailto:jan-paul.triebkorn@charite.de]]
45 -)))
46 -|=Contributors|(((
47 -* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
48 -* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
49 -* [[Paul Triebkorn>>path:mailto:jan-paul.triebkorn@charite.de]]
50 -)))
51 -|=Homepage|[[https:~~/~~/www.brainsimulation.org>>url:https://www.brainsimulation.org/]]
52 -|=Documentation|[[https:~~/~~/drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view>>url:https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view]]
53 -|=Support|[[petra.ritter@charite.de>>path:mailto:petra.ritter@charite.de]]
54 -|=Source Code|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/tvb_converter>>url:https://hub.docker.com/r/thevirtualbrain/tvb_converter]]
55 -|=Download Page|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/tvb_converter>>url:https://hub.docker.com/r/thevirtualbrain/tvb_converter]]
56 -|=License|GPLv3
57 -|=Current Version|1.0
58 -|=All Versions|(((
59 -* 1.0
60 -)))
61 61  
62 -== Publications using TVB C ==
63 63  
64 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
65 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
66 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
67 -* [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
68 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
69 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
70 -* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
71 -)))
72 -
73 -
74 74  (% class="col-xs-12 col-sm-4" %)
75 75  (((
76 76  {{box title="**Contents**"}}
4144.jpeg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.michaels
Size
... ... @@ -1,1 +1,0 @@
1 -146.3 KB
Content
fasttvb.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.michaels
Size
... ... @@ -1,1 +1,0 @@
1 -36.4 KB
Content
XWiki.XWikiRights[3]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Levels
... ... @@ -1,1 +1,0 @@
1 -view
Users
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiGuest
XWiki.XWikiRights[4]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiAllGroup
Levels
... ... @@ -1,1 +1,0 @@
1 -view