What can I find here?

• an IPython notebook that describes how to
  • pull the TVB-C container into one of the associated supercomputers using PyUnicore
  • upload model data to the supercomputer
  • set up and run simulations
  • download simulation results

How do I use it?

• the simulation code is implemented as a Docker container
• the container is executed on supercomputers and operated via IPython notebooks
• Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
• To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
• Then, head over to https://lab.ebrains.eu/ to edit and run your notebook.
• Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"

Partners

• Charité Universitätsmedizin Berlin

Developer

• Michael Schirner (michael.schirner@charite.de)