Version 18.1 by michaels on 2020/05/06 15:07
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michaels 7.1 5 = TVB C ~-~- High-speed parallel brain network models =
michaels 1.1 6
michaels 7.1 7 A fast implementation of The Virtual Brain brain network simulator
michaels 10.1 8
michaels 17.1 9 [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/f5e40b3b-91cb-4671-9178-4d2673ad8ac4]]
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michaels 13.1 19 == What can I find here? ==
michaels 1.1 20
michaels 7.1 21 * an IPython notebook that describes how to
22 ** pull the TVB-C container into one of the associated supercomputers using PyUnicore
23 ** upload model data to the supercomputer
24 ** set up and run simulations
25 ** download simulation results
michaels 8.1 26
27 == How do I use it? ==
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29 * the simulation code is implemented as a Docker container
30 * the container is executed on supercomputers and operated via IPython notebooks
31 * Find the notebook by clicking on "Drive" in the left menu. The notebook is called "TVB_C.ipynb"
32 * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
33 * Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
34 * Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
michaels 13.1 35
michaels 14.1 36 == Metadata ==
michaels 13.1 37
michaels 18.1 38 |=Partners|(((
39 * Charité Universitätsmedizin Berlin [[CHARITE>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
40 )))
41 |=Maintainers|(((
42 * [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
43 * [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
44 * [[Paul Triebkorn>>path:mailto:jan-paul.triebkorn@charite.de]]
45 )))
46 |=Contributors|(((
47 * [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
48 * [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
49 * [[Paul Triebkorn>>path:mailto:jan-paul.triebkorn@charite.de]]
50 )))
51 |=Homepage|[[https:~~/~~/www.brainsimulation.org>>url:https://www.brainsimulation.org/]]
52 |=Documentation|[[https:~~/~~/drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view>>url:https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view]]
53 |=Support|[[petra.ritter@charite.de>>path:mailto:petra.ritter@charite.de]]
54 |=Source Code|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/tvb_converter>>url:https://hub.docker.com/r/thevirtualbrain/tvb_converter]]
55 |=Download Page|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/tvb_converter>>url:https://hub.docker.com/r/thevirtualbrain/tvb_converter]]
56 |=License|GPLv3
57 |=Current Version|1.0
58 |=All Versions|(((
59 * 1.0
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michaels 13.1 61
michaels 15.1 62 == Publications using TVB C ==
63
64 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29308767>>url:https://www.ncbi.nlm.nih.gov/pubmed/29308767]]
65 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/32194282>>url:https://www.ncbi.nlm.nih.gov/pubmed/32194282]]
66 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/29911173>>url:https://www.ncbi.nlm.nih.gov/pubmed/29911173]]
67 * [[https:~~/~~/www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020>>url:https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0039-3403020]]
68 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=31316116>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=31316116]]
69 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=30035018>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=30035018]]
70 * [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/?term=27041212>>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=27041212]]
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76 {{box title="**Contents**"}}
77 {{toc/}}
78 {{/box}}
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