Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Last modified by dionperd on 2024/04/08 12:54
From version 24.1
edited by dionperd
on 2022/11/08 12:40
Change comment: There is no comment for this version
To version 27.1
edited by dionperd
on 2024/04/08 12:50
Change comment: There is no comment for this version

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1 1  (% class="wikigeneratedid" %)
2 -What can I find here?
2 +=== (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)** ===
3 3  
4 +
5 +=== What can I find here? ===
6 +
4 4  * Presentation slides from the workshop's introductory lecture on TVB-multiscale cosimulation ([[2021-06-04-5thTVBinEBRAINSworkshlp.pdf>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/5thTVBinEBRAINSworkshop/2021-06-04-5thTVBinEBRAINSworkshlp.pdf]]).
5 5  * A Jupyter notebook [[BasalGanglia.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/5thTVBinEBRAINSworkshop/BasalGanglia.ipynb]] used for the hands-on session
6 6  * A Jupyter notebook [[BasalHomeworkSolved.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/5thTVBinEBRAINSworkshop/BasalGangliaSolved.ipynb]] with all the solutions to the session, which will be posted right after the session is over.
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7 7  
8 8  === Guide to run the use-case notebook ===
9 9  
10 -1. Run the TVB-MULTISCALE app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account.
13 +1. Run the TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account.
11 11  1. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users.
12 12  1. You will need the notebook [[BasalGanglia.ipynb>>https://drive.ebrains.eu/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/file/5thTVBinEBRAINSworkshop/BasalGanglia.ipynb]], the data folder [[basal_ganglia_conn>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop/basal_ganglia_conn]], and the pictures folder [[pics>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop/pics]], found in the [[drive folder 5thTVBinEBRAINSworkshop>>https://drive.ebrains.eu/#my-libs/lib/14db5dbf-97c8-4971-86e5-9b15fd57dd87/5thTVBinEBRAINSworkshop]]. All materials can also be found at the file [[HandsOn.zip>>https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/4th%20TVB%20in%20EBRAINS%20TVB-multiscale%20cosimulation%20hands-on%20session/WebHome/HandsOn.zip?rev=1.1]] attached to the current page (scroll down to find it).
13 13  1. The easiest way to get the above materials is to upload HandsOn.zip to "ContributedNotebooks" folder, and run the command