TVB-multiscale JupyterHub apps are now deprecated! See: https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/ about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!

What can I find here?

• Presentation slides from the workshop's introductory lecture on TVB-multiscale cosimulation (2021-06-04-5thTVBinEBRAINSworkshlp.pdf).
• A Jupyter notebook BasalGanglia.ipynb used for the hands-on session
• A Jupyter notebook BasalHomeworkSolved.ipynb with all the solutions to the session, which will be posted right after the session is over.

Guide to run the use-case notebook

1. Run the TVB-Multiscale app by browsing to https://tvb-multiscale.apps.hbp.eu/ and logging in with your EBRAINS account.
2. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users.
3. You will need the notebook BasalGanglia.ipynb, the data folder basal_ganglia_conn, and the pictures folder pics, found in the drive folder 5thTVBinEBRAINSworkshop. All materials can also be found at the file HandsOn.zip attached to the current page (scroll down to find it).
4. The easiest way to get the above materials is to upload HandsOn.zip to "ContributedNotebooks" folder, and run the command
   ! unzip ./HandsOn.zip
   on a cell of a new notebook, from within the same folder.
5. Finally, navigate inside the decompressed HandsOn folder and run the notebook BasalGanglia.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app.